[%anchor_matrix.name%]

[%IF anchor_tf_db%] [%ELSE%] [%END%] [%IF anchor_matrix.tag('family')%] [%ELSE%] [%END%] [%IF anchor_matrix.tag('tax_group')%] [%ELSE%] [%END%]
TF ID:[%anchor_matrix.ID%][%anchor_matrix.ID%]
Class: [%anchor_matrix.class%]
Family:[%anchor_matrix.tag('family')%]NA
Tax group:[%anchor_matrix.tag('tax_group')%]NA
Information content: [%IF anchor_matrix.isa('TFBS::Matrix::PFM')%] [%total_ic = formatf(3, anchor_matrix.to_ICM.total_ic)%] [%IF total_ic > high_matrix_ic or total_ic < low_matrix_ic%] [%total_ic%] [%ELSE%] [%total_ic%] [%END%] [%ELSE%] NA [%END%]
GC content: [%gc = formatf(3, anchor_matrix.tag('gc_content'))%] [%IF gc > high_matrix_gc or gc < low_matrix_gc%] [%gc%] [%ELSE%] [%gc%] [%END%]

[%tf.name%]

[%IF tf_db%] [%ELSE%] [%END%] [%IF tf.tag('family')%] [%ELSE%] [%END%] [%IF tf.tag('tax_group')%] [%ELSE%] [%END%]
TF ID:[%tf.ID%][%tf.ID%]
Class: [%tf.class%]
Family:[%tf.tag('family')%]NA
Tax group:[%tf.tag('tax_group')%]NA
Information content: [%IF tf.isa('TFBS::Matrix::PFM')%] [%total_ic = formatf(3, tf.to_ICM.total_ic)%] [%IF total_ic > high_matrix_ic or total_ic < low_matrix_ic%] [%total_ic%] [%ELSE%] [%total_ic%] [%END%] [%ELSE%] NA [%END%]
GC content: [%gc = formatf(3, tf.tag('gc_content'))%] [%IF gc > high_matrix_gc or gc < low_matrix_gc%] [%gc%] [%ELSE%] [%gc%] [%END%]

[%anchor_matrix.name%] - [%tf.name%] Binding Site Combinations

[%IF seq_ids%] [%FOREACH seq_id = seq_ids%] [%display_id = seq_id_display_ids.$seq_id%] [%first = 1%] [%sitepairs = seq_sitepairs.$seq_id%] [%FOREACH sitepair = sitepairs%] [%anchor_site = sitepair.anchor_site%] [%tf_site = sitepair.tf_site%] [%anchor_rel_score = anchor_site.rel_score * 100%] [%tf_rel_score = tf_site.rel_score * 100%] [%UNLESS first == 1%] [%END%] [%first = 0%] [%END%] [%END%] [%ELSE%] [%END%]
Sequence ID Anchoring TF Start End Strand Score %Score TFBS Sequence Anchored TF Start End Strand Score %Score TFBS Sequence Distance
[%display_id%]
[%anchor_matrix.name%] [%anchor_site.start%] [%anchor_site.end%] [%IF anchor_site.strand == 1%]+[%ELSE%]-[%END%] [%formatf(3, anchor_site.score)%] [%formatf(1, anchor_rel_score)%]% [%anchor_site.seq%] [%tf.name%] [%tf_site.start%] [%tf_site.end%] [%IF tf_site.strand == 1%]+[%ELSE%]-[%END%] [%formatf(3, tf_site.score)%] [%formatf(1, tf_rel_score)%]% [%tf_site.seq%] [%sitepair.distance%]
No sites found for this TF

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