Job ID: | [%job_id%] | ||
Target sequence file: | [%user_seq_file%] | ||
Background sequence file: | [%user_bg_seq_file%] | ||
Background sequence set: | [%bg_seq_set_name%] | ||
Number of target sequences: | [%num_t_seqs%] | ||
Number of background sequences: | [%num_bg_seqs%] | ||
Total target sequence length: | [%t_seq_len%] | ||
Total background sequence length: | [%bg_seq_len%] | ||
Target sequence GC content: | [%IF t_seq_gc_content > high_seq_gc or t_seq_gc_content < low_seq_gc%] [%t_seq_gc_content%] [%ELSE%] [%t_seq_gc_content%] [%END%] | ||
Background sequence GC content: | [%IF bg_seq_gc_content > high_seq_gc or bg_seq_gc_content < low_seq_gc%] [%bg_seq_gc_content%] [%ELSE%] [%bg_seq_gc_content%] [%END%] | ||
Anchoring TF: | [%anchor_tf_name%] ([%anchor_cluster.name()%]) | ||
Maximum Inter-Binding Distance: | [%max_site_distance%] | ||
TFBS profile matrix source: | [%tf_db%] | ||
JASPAR collection(s): | [%FOREACH collection = collections%][%collection%] [%END%] | ||
TF cluster families: | [%FOREACH family = tf_families%][%family%] [%END%] | ||
Taxonomic supergroup(s): | [%FOREACH tax_group = tax_groups%][%tax_group%] [%END%] | ||
Min. IC: | [%min_ic%] bits | ||
Matrix score threshold: | [%threshold*100%]% | ||
Results returned: | [%IF result_type == 'top_x_results'%] [%IF num_display_results == 'All'%]All results sorted by [%display_sort_by%] | [%ELSE%]Top [%num_display_results%] results sorted by [%display_sort_by%] | [%END%] [%ELSIF result_type == 'significant_hits'%]All results with a Z-score >= [%zscore_cutoff%] and a Fisher score >= [%fisher_cutoff%] sorted by [%display_sort_by%] | [%END%]
The results will be sent to the following email: | [%email%] |
[%message%]
[%ELSIF results%] [%IF warn_zero_bg_hits%]Warning: The provided background set resulted in zero binding sites for one or more TF clusters. These cases are highlighted in red. In cases where there were also zero binding sites for the target set, the Z-score is undefined (NA). In cases where there were one or more binding sites in the target set, the Z-score is infinite (Inf). However, the result may or may not be considered significant. Results for which this was the case are marked with an asterisk (*).
[%END%]TFBS cluster name | Target seq. hits | Target seq. non-hits | Background seq. hits | Background seq. non-hits | Target cluster hits | Target cluster nucleotide rate | Background cluster hits | Background cluster nucleotide rate | Z-score | Fisher score | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
*[%cl.name%] | [%ELSE%][%cl.name%] | [%END%][%IF result.t_gene_hits > 0%] [%result.t_gene_hits%] [%ELSE%] [%result.t_gene_hits%] [%END%] | [%result.t_gene_no_hits%] | [%IF result.bg_gene_hits == 0%] [%result.bg_gene_hits%] [%ELSE%] [%result.bg_gene_hits%] [%END%] | [%result.bg_gene_no_hits%] | [%IF result.t_cluster_hits > 0%] [%result.t_cluster_hits%] [%ELSE%] [%result.t_cluster_hits%] [%END%] | [%formatg(3, result.t_cluster_rate)%] | [%IF result.bg_gene_hits == 0%] [%result.bg_cluster_hits%] [%ELSE%] [%result.bg_cluster_hits%] [%END%] | [%IF result.bg_gene_hits == 0%] [%formatg(3, result.bg_cluster_rate)%] [%ELSE%] [%formatg(3, result.bg_cluster_rate)%] [%END%] | [%IF result.bg_gene_hits == 0%] [%IF result.zscore == 'inf' or result.zscore == 'Inf'%]Inf | [%ELSE%]NA | [%END%] [%ELSE%][%formatf(3, result.zscore)%] | [%END%] [%IF result.fisher_p_value == 'inf' or result.fisher_p_value == 'Inf'%]Inf | [%ELSE%][%formatf(3, result.fisher_p_value)%] | [%END%]
Download as a tab delimited text file (results will be kept on the server for [%result_retain_days%] days after analysis)
Consult the help file for an explanation of the column headings.
[%ELSE%]No TFBS clusters were found which matched your search criteria
[%END%]