Job ID: |
[%job_id%] |
Submitted: |
[%submitted_time%] |
[%IF user_seq_file%]
Target sequence file: |
[%user_seq_file%] |
[%END%]
[%IF user_bg_seq_file%]
Background sequence file: |
[%user_bg_seq_file%] |
[%ELSIF bg_seq_set_name%]
Background sequence set: |
[%bg_seq_set_name%] |
[%END%]
[%IF tf_db%]
TFBS profile matrix source: |
JASPAR |
[%IF collection%]
JASPAR collection: |
[%collection%] |
[%IF tf_select_criteria == 'specific'%]
[%IF tf_set%]
[%matrix_list = tf_set.get_matrix_list('name')%]
TFBS profiles: |
[%FOREACH matrix = matrix_list%][%matrix.name()%] [%END%]
|
[%END%]
[%ELSIF tf_select_criteria == 'min_ic'%]
[%IF tax_groups%]
Taxonomic supergroup(s): |
[%FOREACH tax_group = tax_groups%][%tax_group%] [%END%]
|
[%END%]
[%IF min_ic%]
Min. IC: |
[%min_ic%] bits |
[%END%]
[%END%]
[%END%]
[%ELSE%]
TFBS profile matrix source: |
User supplied |
[%IF user_tf_file%]
TFBS profile matrix file: |
[%user_tf_file%] |
[%END%]
[%END%]
Matrix score threshold: |
[%threshold%]% |
[%IF sort_by == 'zscore'%]
[%display_sort_by = 'Z-score'%]
[%ELSIF sort_by == 'fisher_p_value'%]
[%display_sort_by = 'Fisher score'%]
[%ELSE%]
[%display_sort_by = sort_by%]
[%END%]
Results returned: |
[%IF result_type == 'top_x_results'%]
[%IF num_results == 'All'%]
All results sorted by [%display_sort_by%] |
[%ELSE%]
Top [%num_results%] results by [%display_sort_by%] |
[%END%]
[%ELSIF result_type == 'significant_hits'%]
All results with a Z-score >= [%zscore_cutoff%] and a Fisher score >= [%fisher_cutoff%] sorted by [%display_sort_by%] |
[%END%]
The results will be sent to the following email: |
[%email%] |