This table contains the gene and promoter information where the TFBS prediction is found, along with individual TFBS hit locations.
The table is preceded by a header section listing the TF name, JASPAR ID, structural class and family, taxonomic group, information content and GC content of the TFBS profile.
Note that a gene may have multiple alternative promoters. In some cases, the region upstream of one TSS overlaps with the downstream region of an adjacent TSS (depending on the promoter upstream and downstream parameters selected).
For operon genes in the C. elegans genome, the operon ID is displayed.
This column only appears if you specified gene IDs other than Ensembl IDs. Shows the gene ID/symbol of the gene for which the TFBS is predicted. Since there can be a many-to-one mapping between gene IDs and Ensembl IDs, this may be a comma separated list of IDs
The Ensembl ID of the gene for which the TFBS is predicted.
The ID for the operon containing the gene. When a gene occurs as part of an operon, the TFBSs upstream of the first gene in the operon apply to all genes in the operon.
The chromosome on which the gene is located.
The chromosome strand on which the gene is located.
The annotated start position of the gene.
The annotated end position of the gene.
The annotated transcription start site (TSS) position located closest to the given TFBS hit.
The start position of the predicted TFBS.
The end position of the predicted TFBS.
The relative start position of the predicted TFBS to the neareset TSS.
The relative end position of the predicted TFBS to the nearest TSS.
The chromosome strand on which the predicted TFBS is located.
The absolute score of the predicted binding site sequence given the weight matrix profile.
The relative (percentage) score of the predicted binding site sequence given the weight matrix profile.
The predicted binding site sequence. Note that if the TFBS strand is negative, the binding sequence is displayed based on the antisense strand