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A

any - Variable in class org.sbgn.bindings.SBGNBase.Extension
 
any - Variable in class org.sbgn.bindings.SBGNBase.Notes
 
Arc - Class in org.sbgn.bindings
Java class for anonymous complex type.
Arc() - Constructor for class org.sbgn.bindings.Arc
 
arc - Variable in class org.sbgn.bindings.Arcgroup
 
arc - Variable in class org.sbgn.bindings.Map
 
Arc.End - Class in org.sbgn.bindings
Java class for anonymous complex type.
Arc.Next - Class in org.sbgn.bindings
Java class for anonymous complex type.
Arc.Start - Class in org.sbgn.bindings
Java class for anonymous complex type.
Arcgroup - Class in org.sbgn.bindings
Java class for anonymous complex type.
Arcgroup() - Constructor for class org.sbgn.bindings.Arcgroup
 
arcgroup - Variable in class org.sbgn.bindings.Map
 

B

Bbox - Class in org.sbgn.bindings
Java class for anonymous complex type.
Bbox() - Constructor for class org.sbgn.bindings.Bbox
 
bbox - Variable in class org.sbgn.bindings.Glyph
 
bbox - Variable in class org.sbgn.bindings.Label
 
bbox - Variable in class org.sbgn.bindings.Map
 

C

callout - Variable in class org.sbgn.bindings.Glyph
 
Callout() - Constructor for class org.sbgn.bindings.Glyph.Callout
 
clazz - Variable in class org.sbgn.bindings.Arc
 
clazz - Variable in class org.sbgn.bindings.Arcgroup
 
clazz - Variable in class org.sbgn.bindings.Glyph
 
clone - Variable in class org.sbgn.bindings.Glyph
 
Clone() - Constructor for class org.sbgn.bindings.Glyph.Clone
 
compartmentOrder - Variable in class org.sbgn.bindings.Glyph
 
compartmentRef - Variable in class org.sbgn.bindings.Glyph
 
createArc() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Arc
createArcEnd() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Arc.End
createArcgroup() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Arcgroup
createArcNext() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Arc.Next
createArcStart() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Arc.Start
createBbox() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Bbox
createGlyph() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Glyph
createGlyphCallout() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Glyph.Callout
createGlyphClone() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Glyph.Clone
createGlyphEntity() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Glyph.Entity
createGlyphState() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Glyph.State
createLabel() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Label
createMap() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Map
createPoint() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Point
createPort() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Port
createSbgn() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of Sbgn
createSBGNBaseExtension() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of SBGNBase.Extension
createSBGNBaseNotes() - Method in class org.sbgn.bindings.ObjectFactory
Create an instance of SBGNBase.Notes

E

end - Variable in class org.sbgn.bindings.Arc
 
End() - Constructor for class org.sbgn.bindings.Arc.End
 
entity - Variable in class org.sbgn.bindings.Glyph
 
Entity() - Constructor for class org.sbgn.bindings.Glyph.Entity
 
extension - Variable in class org.sbgn.bindings.SBGNBase
 
Extension() - Constructor for class org.sbgn.bindings.SBGNBase.Extension
 

G

getAny() - Method in class org.sbgn.bindings.SBGNBase.Extension
Gets the value of the any property.
getAny() - Method in class org.sbgn.bindings.SBGNBase.Notes
Gets the value of the any property.
getArc() - Method in class org.sbgn.bindings.Arcgroup
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> An arcgroup can have multiple arcs.
getArc() - Method in class org.sbgn.bindings.Map
Gets the value of the arc property.
getArcgroup() - Method in class org.sbgn.bindings.Map
Gets the value of the arcgroup property.
getBbox() - Method in class org.sbgn.bindings.Glyph
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> The bbox element is mandatory and unique: exactly one per glyph.
getBbox() - Method in class org.sbgn.bindings.Label
Gets the value of the bbox property.
getBbox() - Method in class org.sbgn.bindings.Map
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> The bbox element on a map is not mandatory, it allows the application to define a canvas, and at the same time define a whitespace margin around the glyphs.
getCallout() - Method in class org.sbgn.bindings.Glyph
Gets the value of the callout property.
getClazz() - Method in class org.sbgn.bindings.Arc
Gets the value of the clazz property.
getClazz() - Method in class org.sbgn.bindings.Arcgroup
Gets the value of the clazz property.
getClazz() - Method in class org.sbgn.bindings.Glyph
Gets the value of the clazz property.
getClone() - Method in class org.sbgn.bindings.Glyph
Gets the value of the clone property.
getCompartmentOrder() - Method in class org.sbgn.bindings.Glyph
Gets the value of the compartmentOrder property.
getCompartmentRef() - Method in class org.sbgn.bindings.Glyph
Gets the value of the compartmentRef property.
getEnd() - Method in class org.sbgn.bindings.Arc
Gets the value of the end property.
getEntity() - Method in class org.sbgn.bindings.Glyph
Gets the value of the entity property.
getExtension() - Method in class org.sbgn.bindings.SBGNBase
Gets the value of the extension property.
getGlyph() - Method in class org.sbgn.bindings.Arc
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> In PD, an arc can contain a single optional sub-glyph.
getGlyph() - Method in class org.sbgn.bindings.Arcgroup
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> An arcgroup can contain glyphs.
getGlyph() - Method in class org.sbgn.bindings.Glyph
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> A glyph element can contain any number of children glyph elements.
getGlyph() - Method in class org.sbgn.bindings.Map
Gets the value of the glyph property.
getH() - Method in class org.sbgn.bindings.Bbox
Gets the value of the h property.
getId() - Method in class org.sbgn.bindings.Arc
Gets the value of the id property.
getId() - Method in class org.sbgn.bindings.Glyph
Gets the value of the id property.
getId() - Method in class org.sbgn.bindings.Map
Gets the value of the id property.
getId() - Method in class org.sbgn.bindings.Port
Gets the value of the id property.
getLabel() - Method in class org.sbgn.bindings.Glyph.Clone
Gets the value of the label property.
getLabel() - Method in class org.sbgn.bindings.Glyph
Gets the value of the label property.
getLanguage() - Method in class org.sbgn.bindings.Map
Gets the value of the language property.
getMap() - Method in class org.sbgn.bindings.Sbgn
Gets the value of the map property.
getMapRef() - Method in class org.sbgn.bindings.Glyph
Gets the value of the mapRef property.
getName() - Method in class org.sbgn.bindings.Glyph.Entity
Gets the value of the name property.
getNext() - Method in class org.sbgn.bindings.Arc
Gets the value of the next property.
getNotes() - Method in class org.sbgn.bindings.SBGNBase
Gets the value of the notes property.
getOrientation() - Method in class org.sbgn.bindings.Glyph
Gets the value of the orientation property.
getPoint() - Method in class org.sbgn.bindings.Arc.End
Gets the value of the point property.
getPoint() - Method in class org.sbgn.bindings.Arc.Next
Gets the value of the point property.
getPoint() - Method in class org.sbgn.bindings.Glyph.Callout
Gets the value of the point property.
getPort() - Method in class org.sbgn.bindings.Arc
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> Ports are only allowed in ER.
getPort() - Method in class org.sbgn.bindings.Glyph
Gets the value of the port property.
getSource() - Method in class org.sbgn.bindings.Arc
Gets the value of the source property.
getStart() - Method in class org.sbgn.bindings.Arc
Gets the value of the start property.
getState() - Method in class org.sbgn.bindings.Glyph
Gets the value of the state property.
getTagRef() - Method in class org.sbgn.bindings.Glyph
Gets the value of the tagRef property.
getTarget() - Method in class org.sbgn.bindings.Arc
Gets the value of the target property.
getTarget() - Method in class org.sbgn.bindings.Glyph.Callout
Gets the value of the target property.
getText() - Method in class org.sbgn.bindings.Label
Gets the value of the text property.
getValue() - Method in class org.sbgn.bindings.Glyph.State
Gets the value of the value property.
getVariable() - Method in class org.sbgn.bindings.Glyph.State
Gets the value of the variable property.
getVersion() - Method in class org.sbgn.bindings.Map
Gets the value of the version property.
getW() - Method in class org.sbgn.bindings.Bbox
Gets the value of the w property.
getX() - Method in class org.sbgn.bindings.Arc.End
Gets the value of the x property.
getX() - Method in class org.sbgn.bindings.Arc.Next
Gets the value of the x property.
getX() - Method in class org.sbgn.bindings.Arc.Start
Gets the value of the x property.
getX() - Method in class org.sbgn.bindings.Bbox
Gets the value of the x property.
getX() - Method in class org.sbgn.bindings.Point
Gets the value of the x property.
getX() - Method in class org.sbgn.bindings.Port
Gets the value of the x property.
getY() - Method in class org.sbgn.bindings.Arc.End
Gets the value of the y property.
getY() - Method in class org.sbgn.bindings.Arc.Next
Gets the value of the y property.
getY() - Method in class org.sbgn.bindings.Arc.Start
Gets the value of the y property.
getY() - Method in class org.sbgn.bindings.Bbox
Gets the value of the y property.
getY() - Method in class org.sbgn.bindings.Point
Gets the value of the y property.
getY() - Method in class org.sbgn.bindings.Port
Gets the value of the y property.
glyph - Variable in class org.sbgn.bindings.Arc
 
glyph - Variable in class org.sbgn.bindings.Arcgroup
 
Glyph - Class in org.sbgn.bindings
Java class for anonymous complex type.
Glyph() - Constructor for class org.sbgn.bindings.Glyph
 
glyph - Variable in class org.sbgn.bindings.Glyph
 
glyph - Variable in class org.sbgn.bindings.Map
 
Glyph.Callout - Class in org.sbgn.bindings
Java class for anonymous complex type.
Glyph.Clone - Class in org.sbgn.bindings
Java class for anonymous complex type.
Glyph.Entity - Class in org.sbgn.bindings
Java class for anonymous complex type.
Glyph.State - Class in org.sbgn.bindings
Java class for anonymous complex type.

H

h - Variable in class org.sbgn.bindings.Bbox
 

I

id - Variable in class org.sbgn.bindings.Arc
 
id - Variable in class org.sbgn.bindings.Glyph
 
id - Variable in class org.sbgn.bindings.Map
 
id - Variable in class org.sbgn.bindings.Port
 

L

label - Variable in class org.sbgn.bindings.Glyph.Clone
 
label - Variable in class org.sbgn.bindings.Glyph
 
Label - Class in org.sbgn.bindings
Java class for anonymous complex type.
Label() - Constructor for class org.sbgn.bindings.Label
 
language - Variable in class org.sbgn.bindings.Map
 

M

Map - Class in org.sbgn.bindings
Java class for anonymous complex type.
Map() - Constructor for class org.sbgn.bindings.Map
 
map - Variable in class org.sbgn.bindings.Sbgn
 
mapRef - Variable in class org.sbgn.bindings.Glyph
 

N

name - Variable in class org.sbgn.bindings.Glyph.Entity
 
next - Variable in class org.sbgn.bindings.Arc
 
Next() - Constructor for class org.sbgn.bindings.Arc.Next
 
notes - Variable in class org.sbgn.bindings.SBGNBase
 
Notes() - Constructor for class org.sbgn.bindings.SBGNBase.Notes
 

O

ObjectFactory - Class in org.sbgn.bindings
This object contains factory methods for each Java content interface and Java element interface generated in the org.sbgn.bindings package.
ObjectFactory() - Constructor for class org.sbgn.bindings.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.sbgn.bindings
org.sbgn.bindings - package org.sbgn.bindings
 
orientation - Variable in class org.sbgn.bindings.Glyph
 

P

point - Variable in class org.sbgn.bindings.Arc.End
 
point - Variable in class org.sbgn.bindings.Arc.Next
 
point - Variable in class org.sbgn.bindings.Glyph.Callout
 
Point - Class in org.sbgn.bindings
Java class for anonymous complex type.
Point() - Constructor for class org.sbgn.bindings.Point
 
port - Variable in class org.sbgn.bindings.Arc
 
port - Variable in class org.sbgn.bindings.Glyph
 
Port - Class in org.sbgn.bindings
Java class for anonymous complex type.
Port() - Constructor for class org.sbgn.bindings.Port
 

S

Sbgn - Class in org.sbgn.bindings
Java class for anonymous complex type.
Sbgn() - Constructor for class org.sbgn.bindings.Sbgn
 
SBGNBase - Class in org.sbgn.bindings
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> The SBGNBase type is the base type of all main components in SBGN.
SBGNBase() - Constructor for class org.sbgn.bindings.SBGNBase
 
SBGNBase.Extension - Class in org.sbgn.bindings
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> The extension element stores extension information like render information, metadata or annotations.
SBGNBase.Notes - Class in org.sbgn.bindings
<?xml version="1.0" encoding="UTF-8"?><p xmlns="http://sbgn.org/libsbgn/0.3" xmlns:sbgn="http://sbgn.org/libsbgn/0.3" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> The notes element stores notes.
setBbox(Bbox) - Method in class org.sbgn.bindings.Glyph
Sets the value of the bbox property.
setBbox(Bbox) - Method in class org.sbgn.bindings.Label
Sets the value of the bbox property.
setBbox(Bbox) - Method in class org.sbgn.bindings.Map
Sets the value of the bbox property.
setCallout(Glyph.Callout) - Method in class org.sbgn.bindings.Glyph
Sets the value of the callout property.
setClazz(String) - Method in class org.sbgn.bindings.Arc
Sets the value of the clazz property.
setClazz(String) - Method in class org.sbgn.bindings.Arcgroup
Sets the value of the clazz property.
setClazz(String) - Method in class org.sbgn.bindings.Glyph
Sets the value of the clazz property.
setClone(Glyph.Clone) - Method in class org.sbgn.bindings.Glyph
Sets the value of the clone property.
setCompartmentOrder(Float) - Method in class org.sbgn.bindings.Glyph
Sets the value of the compartmentOrder property.
setCompartmentRef(Object) - Method in class org.sbgn.bindings.Glyph
Sets the value of the compartmentRef property.
setEnd(Arc.End) - Method in class org.sbgn.bindings.Arc
Sets the value of the end property.
setEntity(Glyph.Entity) - Method in class org.sbgn.bindings.Glyph
Sets the value of the entity property.
setExtension(SBGNBase.Extension) - Method in class org.sbgn.bindings.SBGNBase
Sets the value of the extension property.
setH(float) - Method in class org.sbgn.bindings.Bbox
Sets the value of the h property.
setId(String) - Method in class org.sbgn.bindings.Arc
Sets the value of the id property.
setId(String) - Method in class org.sbgn.bindings.Glyph
Sets the value of the id property.
setId(String) - Method in class org.sbgn.bindings.Map
Sets the value of the id property.
setId(String) - Method in class org.sbgn.bindings.Port
Sets the value of the id property.
setLabel(Label) - Method in class org.sbgn.bindings.Glyph.Clone
Sets the value of the label property.
setLabel(Label) - Method in class org.sbgn.bindings.Glyph
Sets the value of the label property.
setLanguage(String) - Method in class org.sbgn.bindings.Map
Sets the value of the language property.
setMapRef(Object) - Method in class org.sbgn.bindings.Glyph
Sets the value of the mapRef property.
setName(String) - Method in class org.sbgn.bindings.Glyph.Entity
Sets the value of the name property.
setNotes(SBGNBase.Notes) - Method in class org.sbgn.bindings.SBGNBase
Sets the value of the notes property.
setOrientation(String) - Method in class org.sbgn.bindings.Glyph
Sets the value of the orientation property.
setPoint(Point) - Method in class org.sbgn.bindings.Glyph.Callout
Sets the value of the point property.
setSource(Object) - Method in class org.sbgn.bindings.Arc
Sets the value of the source property.
setStart(Arc.Start) - Method in class org.sbgn.bindings.Arc
Sets the value of the start property.
setState(Glyph.State) - Method in class org.sbgn.bindings.Glyph
Sets the value of the state property.
setTagRef(Object) - Method in class org.sbgn.bindings.Glyph
Sets the value of the tagRef property.
setTarget(Object) - Method in class org.sbgn.bindings.Arc
Sets the value of the target property.
setTarget(Object) - Method in class org.sbgn.bindings.Glyph.Callout
Sets the value of the target property.
setText(String) - Method in class org.sbgn.bindings.Label
Sets the value of the text property.
setValue(String) - Method in class org.sbgn.bindings.Glyph.State
Sets the value of the value property.
setVariable(String) - Method in class org.sbgn.bindings.Glyph.State
Sets the value of the variable property.
setVersion(String) - Method in class org.sbgn.bindings.Map
Sets the value of the version property.
setW(float) - Method in class org.sbgn.bindings.Bbox
Sets the value of the w property.
setX(float) - Method in class org.sbgn.bindings.Arc.End
Sets the value of the x property.
setX(float) - Method in class org.sbgn.bindings.Arc.Next
Sets the value of the x property.
setX(float) - Method in class org.sbgn.bindings.Arc.Start
Sets the value of the x property.
setX(float) - Method in class org.sbgn.bindings.Bbox
Sets the value of the x property.
setX(float) - Method in class org.sbgn.bindings.Point
Sets the value of the x property.
setX(float) - Method in class org.sbgn.bindings.Port
Sets the value of the x property.
setY(float) - Method in class org.sbgn.bindings.Arc.End
Sets the value of the y property.
setY(float) - Method in class org.sbgn.bindings.Arc.Next
Sets the value of the y property.
setY(float) - Method in class org.sbgn.bindings.Arc.Start
Sets the value of the y property.
setY(float) - Method in class org.sbgn.bindings.Bbox
Sets the value of the y property.
setY(float) - Method in class org.sbgn.bindings.Point
Sets the value of the y property.
setY(float) - Method in class org.sbgn.bindings.Port
Sets the value of the y property.
source - Variable in class org.sbgn.bindings.Arc
 
start - Variable in class org.sbgn.bindings.Arc
 
Start() - Constructor for class org.sbgn.bindings.Arc.Start
 
state - Variable in class org.sbgn.bindings.Glyph
 
State() - Constructor for class org.sbgn.bindings.Glyph.State
 

T

tagRef - Variable in class org.sbgn.bindings.Glyph
 
target - Variable in class org.sbgn.bindings.Arc
 
target - Variable in class org.sbgn.bindings.Glyph.Callout
 
text - Variable in class org.sbgn.bindings.Label
 

V

value - Variable in class org.sbgn.bindings.Glyph.State
 
variable - Variable in class org.sbgn.bindings.Glyph.State
 
version - Variable in class org.sbgn.bindings.Map
 

W

w - Variable in class org.sbgn.bindings.Bbox
 

X

x - Variable in class org.sbgn.bindings.Arc.End
 
x - Variable in class org.sbgn.bindings.Arc.Next
 
x - Variable in class org.sbgn.bindings.Arc.Start
 
x - Variable in class org.sbgn.bindings.Bbox
 
x - Variable in class org.sbgn.bindings.Point
 
x - Variable in class org.sbgn.bindings.Port
 

Y

y - Variable in class org.sbgn.bindings.Arc.End
 
y - Variable in class org.sbgn.bindings.Arc.Next
 
y - Variable in class org.sbgn.bindings.Arc.Start
 
y - Variable in class org.sbgn.bindings.Bbox
 
y - Variable in class org.sbgn.bindings.Point
 
y - Variable in class org.sbgn.bindings.Port
 
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Generated September 30 2016