{% load filter_extras %} {% load humanize %}
Options | Individual |
Chr![]() ![]() |
RsId![]() ![]() |
Pos![]() ![]() |
Qual![]() ![]() |
Ref![]() ![]() |
Alt![]() ![]() |
Filter |
Gen![]() ![]() |
Father | Mother | Read Depth | Effect | Impact | Func Class |
1kgenomes
![]() ![]() |
dbSNP | ESP6500 | Sift | PP2 | DANN | CADD | OMIM | HGMD | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
{{ gene.grouper }} |
|||||||||||||||||||||||||
Omim - GeneCards - NCBI | |||||||||||||||||||||||||
Options | Individual |
Chr![]() ![]() |
RsId![]() ![]() |
Pos![]() ![]() |
Qual![]() ![]() |
Ref![]() ![]() |
Alt![]() ![]() |
Filter |
Gen![]() ![]() |
Father | Mother | Read Depth | Effect | Impact | Func Class |
1kgenomes
![]() ![]() |
dbSNP | ESP6500 | Sift | PP2 | DANN | CADD | OMIM | HGMD | |
View | {{ variant.individual }} | {{ variant.chr }} | {{ variant.variant_id }}
{% if variant.variant_id != "." %}
dbSNP |
{% endif %} {{ variant.pos }} | {{ variant.qual }} | {{ variant.ref|truncatechars:5 }} | {{ variant.alt|truncatechars:5 }} | {{ variant.filter }} | {{ variant.genotype }} | {{ variant.father }} | {{ variant.mother }} | {{ variant.read_depth }} | {{ variant.snpeff_effect }} | {{ variant.snpeff_impact }} | {{ variant.snpeff_func_class }} | {{ variant.genomes1k_maf|floatformat:5|intcomma }} | {{ variant.dbsnp_maf|floatformat:5|intcomma }} | {{ variant.esp_maf|floatformat:5|intcomma }} | {{ variant.sift|floatformat:2 }} | {{ variant.polyphen2|floatformat:2 }} | {{ variant.dann|floatformat:2 }} | {{ variant.cadd|floatformat:2 }} | {% if variant.is_at_omim %} {{ variant.is_at_omim }} {% endif %} |
{% if variant.is_at_hgmd %}
{{ variant.is_at_hgmd }}
{{ variant.hgmd_entries }} {% endif %} |