individual | {{ variant.individual.id }} - {{ variant.individual }} |
---|---|
index | {{ variant.index }} |
chr | {{ variant.chr }} |
pos | {{ variant.pos }} |
variant_id | {{ variant.variant_id }} |
ref | {{ variant.ref }} |
alt | {{ variant.alt }} |
qual | {{ variant.qual }} |
filter | {{ variant.filter }} |
format | {{ variant.format }} |
genotype_col | {{ variant.genotype_col }} |
genotype | {{ variant.genotype }} |
read_depth | {{ variant.read_depth }} |
gene | {{ variant.gene }} |
mutation_type | {{ variant.mutation_type }} |
vartype | {{ variant.vartype }} |
genomes1k_maf | {{ variant.genomes1k_maf }} |
dbsnp_maf | {{ variant.dbsnp_maf }} |
esp_maf | {{ variant.esp_maf }} |
dbsnp_build | {{ variant.dbsnp_build }} |
sift | {{ variant.sift }} |
sift_pred | {{ variant.sift_pred }} |
polyphen2 | {{ variant.polyphen2 }} |
polyphen2_pred | {{ variant.polyphen2_pred }} |
condel | {{ variant.condel }} |
condel_pred | {{ variant.condel_pred }} |
dann | {{ variant.dann }} |
cadd | {{ variant.cadd }} |
is_at_omim | {{ variant.is_at_omim }} |
is_at_hgmd | {{ variant.is_at_hgmd }} |
hgmd_entries | {{ variant.hgmd_entries }} |
INFO
{{key}} | {{value}} |
---|
snpEff
effect | {{ variant.snpeff_effect }} |
impact | {{ variant.snpeff_impact }} |
functional_class | {{ variant.snpeff_func_class }} |
codon_change | {{ variant.snpeff_codon_change }} |
aa_change | {{ variant.snpeff_aa_change }} |
aa_len | {{ variant.snpeff_aa_len }} |
gene_name | {{ variant.snpeff_gene_name }} |
biotype | {{ variant.snpeff_biotype }} |
gene_coding | {{ variant.snpeff_gene_coding }} |
transcript_id | {{ variant.snpeff_transcript_id }} |
exon_rank | {{ variant.snpeff_exon_rank }} |
genotype_number | {{ variant.snpeff_genotype_number }} |
VEP
allele | {{variant.vep_allele}} |
gene | {{variant.vep_gene}} |
feature | {{variant.vep_feature}} |
feature_type | {{variant.vep_feature_type}} |
consequence | {{variant.vep_consequence}} |
cdna_position | {{variant.vep_cdna_position}} |
cds_position | {{variant.vep_cds_position}} |
protein_position | {{variant.vep_protein_position}} |
amino_acids | {{variant.vep_amino_acids}} |
codons | {{variant.vep_codons}} |
existing_variation | {{variant.vep_existing_variation}} |
distance | {{variant.vep_distance}} |
strand | {{variant.vep_strand}} |
symbol | {{variant.vep_symbol}} |
symbol_source | {{variant.vep_symbol_source}} |
sift | {{variant.vep_sift}} |
polyphen | {{variant.vep_polyphen}} |
condel | {{variant.vep_condel}} |