{% load filter_extras %} {% load humanize %}
{{ gene.grouper }} |
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Omim - GeneCards - NCBI | |||||||||||||||||||||||||
Options | Individual |
Chr![]() ![]() |
RsId![]() ![]() |
Pos![]() ![]() |
Qual![]() ![]() |
Ref![]() ![]() |
Alt![]() ![]() |
Filter |
Gen![]() ![]() |
Read Depth | Effect | Impact | Func Class |
1kgenomes
![]() ![]() |
dbSNP | ESP6500 | Sift | PP2 | CADD | M-CAP | CLINVAR | HI Score | |||
View | {{ variant.individual }} | {{ variant.chr }} | {{ variant.variant_id }}
{% if variant.variant_id != "." %}
dbSNP Clinvar |
{% endif %} {{ variant.pos }} | {{ variant.qual }} | {{ variant.ref|truncatechars:5 }} | {{ variant.alt|truncatechars:5 }} | {{ variant.filter }} | {{ variant.genotype }} | {{ variant.read_depth }} | {{ variant.snpeff_effect }} | {{ variant.snpeff_impact }} | {{ variant.snpeff_func_class }} | {{ variant.genomes1k_maf|floatformat:5|intcomma }} | {{ variant.dbsnp_maf|floatformat:5|intcomma }} | {{ variant.esp_maf|floatformat:5|intcomma }} | {{ variant.sift|floatformat:2 }} | {{ variant.polyphen2|floatformat:2 }} | {{ variant.cadd|floatformat:2 }} | {{ variant.mcap_score|floatformat:2 }} {{ variant.mcap_rankscore }} {{ variant.mcap_pred }} | {{ variant.clinvar_rs }} {{ variant.clinvar_clnsig }} {{ variant.clinvar_trait }} {{ variant.clinvar_golden_stars }} | {{variant.hi_index_str}} |