{% extends "base.html" %} {% load i18n %} {% load static %} {% load pagination_tags %} {% load get_genotype %} {% block title %}{% trans "View Individual" %}{% endblock %} {% block content %}

Name: {{ individual.name }}
Variants: {{ individual.n_variants }}
Novel Variants: {{ individual.novel_variants }} (Not in latest DbSNP Build)

{% for item in individual.summary %} {% for value in item.discrete %} {% endfor %} {% endfor %}
Type Total Variants
{{ item.type }} {{ item.total }}{{ value.total }} {{ value.genotype }}

{% for item in individual.snp_eff %} {% endfor %}
Type Total Variants
{{ item.snpeff_effect }}{{ item.snpeff_effect__count }}

{% for item in individual.functional_class %} {% endfor %}
Type Total Variants
{{ item.snpeff_func_class }}{{ item.snpeff_func_class__count }}

{% for item in individual.impact_variants %} {% endfor %}
Type Total Variants
{{ item.snpeff_impact }}{{ item.snpeff_impact__count }}

{% for item in individual.filter_variants %} {% endfor %}
Type Total Variants
{{ item.filter }}{{ item.filter__count }}

Quality Value
Min{{ individual.quality.qual__min }}
Average{{ individual.quality.qual__avg }}
Max{{ individual.quality.qual__max }}

Read Depth Value
Min{{ individual.read_depth.read_depth__min }}
Average{{ individual.read_depth.read_depth__avg }}
Max{{ individual.read_depth.read_depth__max }}

{% for item in individual.clinvar_clnsig %} {% endfor %}
Type Total Variants
{{ item.clinvar_clnsig }}{{ item.total }}

{% for item in individual.chromossome %} {% endfor %}
Chromossome Total Variants
{{ item.chr }}{{ item.total }}

{% for individual_medical_condition in individual_medical_conditions %}

{{ individual_medical_condition.medical_condition.name }}


{% autoescape off %} {{ individual_medical_condition.medical_condition.description_html }} {% endautoescape %} {% for variant in individual_medical_condition.variants.all %}

{{ variant.snp.name }}

{% autoescape off %} {{ variant.snp.description_html }} {% endautoescape %}

Individual Genotype: {{ variant.individual_variant|get_genotype }}, genoinfo:{{ variant.individual_variant.genotype_info }} qual: {{ variant.individual_variant.qual }}

{% for snpgenotype in variant.snp.snpgenotype_set.all %} {% endfor %}
Genotype Magnitude Summary
{{ snpgenotype.genotype }} {{ snpgenotype.magnitude }} {{ snpgenotype.summary }}
{% endfor %} {% endfor %}
{% for individual_medicine in individual_medicines %}

{{ individual_medicine.medicine.name }}


{% autoescape off %} {{ individual_medicine.medicine.description_html }} {% endautoescape %} {% for variant in individual_medicine.variants.all %}

{{ variant.snp.name }}

{% autoescape off %} {{ variant.snp.description_html }} {% endautoescape %}

Individual Genotype: {{ variant.individual_variant|get_genotype }}, genoinfo:{{ variant.individual_variant.genotype_info }} qual: {{ variant.individual_variant.qual }}

{% for snpgenotype in variant.snp.snpgenotype_set.all %} {% endfor %}
Genotype Magnitude Summary
{{ snpgenotype.genotype }} {{ snpgenotype.magnitude }} {{ snpgenotype.summary }}
{% endfor %} {% endfor %}
{% endblock %}