{% extends "base.html" %} {% block content %}

View Variant {{ variant.id }}

individual{{ variant.individual.id }} - {{ variant.individual }}
index{{ variant.index }}
chr{{ variant.chr }}
pos{{ variant.pos }}
variant_id{{ variant.variant_id }}
ref{{ variant.ref }}
alt{{ variant.alt }}
qual{{ variant.qual }}
filter{{ variant.filter }}
format{{ variant.format }}
genotype_col{{ variant.genotype_col }}
genotype{{ variant.genotype }}
read_depth{{ variant.read_depth }}
gene{{ variant.gene }}
mutation_type{{ variant.mutation_type }}
vartype{{ variant.vartype }}
genomes1k_maf{{ variant.genomes1k_maf }}
dbsnp_maf{{ variant.dbsnp_maf }}
esp_maf{{ variant.esp_maf }}
dbsnp_build{{ variant.dbsnp_build }}
sift{{ variant.sift }}
sift_pred{{ variant.sift_pred }}
polyphen2{{ variant.polyphen2 }}
polyphen2_pred{{ variant.polyphen2_pred }}
condel{{ variant.condel }}
condel_pred{{ variant.condel_pred }}
dann{{ variant.dann }}
cadd{{ variant.cadd }}
is_at_omim{{ variant.is_at_omim }}
is_at_hgmd{{ variant.is_at_hgmd }}
hgmd_entries{{ variant.hgmd_entries }}

INFO

{% for key, value in variant.info.items %} {% endfor %}
{{key}}{{value}}

snpEff

effect{{ variant.snpeff_effect }}
impact{{ variant.snpeff_impact }}
functional_class{{ variant.snpeff_func_class }}
codon_change{{ variant.snpeff_codon_change }}
aa_change{{ variant.snpeff_aa_change }}
aa_len{{ variant.snpeff_aa_len }}
gene_name{{ variant.snpeff_gene_name }}
biotype{{ variant.snpeff_biotype }}
gene_coding{{ variant.snpeff_gene_coding }}
transcript_id{{ variant.snpeff_transcript_id }}
exon_rank{{ variant.snpeff_exon_rank }}
genotype_number{{ variant.snpeff_genotype_number }}

VEP

allele{{variant.vep_allele}}
gene{{variant.vep_gene}}
feature{{variant.vep_feature}}
feature_type{{variant.vep_feature_type}}
consequence{{variant.vep_consequence}}
cdna_position{{variant.vep_cdna_position}}
cds_position{{variant.vep_cds_position}}
protein_position{{variant.vep_protein_position}}
amino_acids{{variant.vep_amino_acids}}
codons{{variant.vep_codons}}
existing_variation{{variant.vep_existing_variation}}
distance{{variant.vep_distance}}
strand{{variant.vep_strand}}
symbol{{variant.vep_symbol}}
symbol_source{{variant.vep_symbol_source}}
sift{{variant.vep_sift}}
polyphen{{variant.vep_polyphen}}
condel{{variant.vep_condel}}
{% endblock content %}