{% load filter_extras %} {% load humanize %} {% regroup variants by gene as gene_list %} {% for gene in gene_list %} {% if gene.grouper %} {% endif %} {% for variant in gene.list %} {% endif %} {% endfor %} {% endfor %}
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Father Mother Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 DANN CADD OMIM HGMD

{{ gene.grouper }}

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Father Mother Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 DANN CADD OMIM HGMD
View {{ variant.individual }} {{ variant.chr }} {{ variant.variant_id }} {% if variant.variant_id != "." %}
dbSNP
{{ variant.pos }} {{ variant.qual }} {{ variant.ref|truncatechars:5 }} {{ variant.alt|truncatechars:5 }} {{ variant.filter }} {{ variant.genotype }} {{ variant.father }} {{ variant.mother }} {{ variant.read_depth }} {{ variant.snpeff_effect }} {{ variant.snpeff_impact }} {{ variant.snpeff_func_class }} {{ variant.genomes1k_maf|floatformat:5|intcomma }} {{ variant.dbsnp_maf|floatformat:5|intcomma }} {{ variant.esp_maf|floatformat:5|intcomma }} {{ variant.sift|floatformat:2 }} {{ variant.polyphen2|floatformat:2 }} {{ variant.dann|floatformat:2 }} {{ variant.cadd|floatformat:2 }} {% if variant.is_at_omim %} {{ variant.is_at_omim }} {% endif %} {% if variant.is_at_hgmd %} {{ variant.is_at_hgmd }}
{{ variant.hgmd_entries }} {% endif %}