BigDataScript report: test.bds

Script file test.bds
Program ID test.bds.20140723_011839_351
Start time 2014-07-23 01:18:39
Run time 00:00:01.272
Tasks executed 2
Arguments* string[] : args = []
System* string : system = "local"
Cpus* int : cpus = 1
Exit value 0
* Values in global scope when program finished execution.

Timeline

Task details

Task Execution Time Dependencies Task program, Errors, StdOut / StdErr
Num 1
Name task.line_3.id_1
PID 12264
OK true
Exit Code 0
Retries
State FINISHED
Dep. OK
Cpus 1
Mem
Start 2014-07-23 01:18:39
End 2014-07-23 01:18:39
Elapsed 00:00:00
Timeout 1 day
Wall Timeout 1 day
Input files test.txt
Output files test.csv
Dependencies
 
# SYS command. line 4

cp test.txt test.csv; echo "copying to test.csv"
 
     
Num 2
Name task.line_7.id_2
PID 12276
OK true
Exit Code 0
Retries
State FINISHED
Dep. OK
Cpus 1
Mem
Start 2014-07-23 01:18:40
End 2014-07-23 01:18:40
Elapsed 00:00:00
Timeout 1 day
Wall Timeout 1 day
Input files test.csv
Output files test.xml
Dependencies task.line_3.id_1
 
# SYS command. line 8

cp test.csv test.xml; echo "copying to test.xml"
 
     

Global scope

Note: Global scope when program finished execution.
Type Name Value
string _ ./test.sh
string[] args []
bool canFail false
string CLUTTER_IM_MODULE xim
string COLORTERM gnome-terminal
string COMPIZ_CONFIG_PROFILE ubuntu
int cpus 1
int cpusLocal 8
int day 86400
string DBUS_SESSION_BUS_ADDRESS unix:abstract=/tmp/dbus-0E9M9mVaMH
string DEFAULTS_PATH /usr/share/gconf/ubuntu.default.path
string DESKTOP_SESSION ubuntu
string DISPLAY :0
int G 1073741824
string GDM_LANG en_US
string GDMSESSION ubuntu
string GNOME_DESKTOP_SESSION_ID this-is-deprecated
string GNOME_KEYRING_CONTROL /run/user/1000/keyring-r8u610
string GNOME_KEYRING_PID 1881
string GPG_AGENT_INFO /run/user/1000/keyring-r8u610/gpg:0:1
string GTK_IM_MODULE ibus
string GTK_MODULES overlay-scrollbar:unity-gtk-module
string HOME /home/pcingola
int hour 3600
string IM_CONFIG_PHASE 1
string INSTANCE Unity
string JOB gnome-session
int K 1024
string LANG en_US.UTF-8
string LANGUAGE en_US
string LESSCLOSE /usr/bin/lesspipe %s %s
string LESSOPEN | /usr/bin/lesspipe %s
string LOGNAME pcingola
string LS_COLORS rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:
int M 1048576
string MANDATORY_PATH /usr/share/gconf/ubuntu.mandatory.path
int mem -1
int minute 60
string NLSPATH /usr/dt/lib/nls/msg/%L/%N.cat
string node
string OLDPWD /home/pcingola/workspace/BigDataScript/test
int P 1125899906842624
string PATH /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/pcingola/tools/ant/bin:/home/pcingola/tools/mvn/bin:/home/pcingola/tools/samtools:/home/pcingola/tools/samtools/bcftools/:/home/pcingola/tools/bwa:/home/pcingola/tools/bowtie:/home/pcingola/tools/bowtie2:/home/pcingola/tools/tophat:/home/pcingola/tools/tabix:/home/pcingola/tools/bedTools/bin/:/home/pcingola/tools/sbt/bin/:/usr/local/go/bin:/home/pcingola/tools/Sublime_Text_2:/home/pcingola/.bds
string ppwd /data/pcingola/Documents/workspace/BigDataScript/test/BIOINF_2014_reviewer_1
string programName test.bds
string programPath test.bds
string PWD /home/pcingola/workspace/BigDataScript/test/BIOINF_2014_reviewer_1
string QT4_IM_MODULE ibus
string QT_IM_MODULE ibus
string QT_QPA_PLATFORMTHEME appmenu-qt5
string queue
int retry 0
string SELINUX_INIT YES
string SESSIONTYPE gnome-session
string SHELL /bin/bash
string SHLVL 1
string SSH_AGENT_LAUNCHER upstart
string SSH_AGENT_PID 1954
string SSH_AUTH_SOCK /run/user/1000/keyring-r8u610/ssh
string system local
int T 1099511627776
string TERM xterm
string TEXTDOMAIN im-config
string TEXTDOMAINDIR /usr/share/locale/
int timeout 86400
string UBUNTU_MENUPROXY 1
string UPSTART_EVENTS started starting
string UPSTART_INSTANCE
string UPSTART_JOB unity-settings-daemon
string UPSTART_SESSION unix:abstract=/com/ubuntu/upstart-session/1000/1886
string USER pcingola
string VTE_VERSION 3409
int walltimeout 86400
int week 604800
string WINDOWID 67108876
string XAUTHORITY /home/pcingola/.Xauthority
string XDG_CONFIG_DIRS /etc/xdg/xdg-ubuntu:/usr/share/upstart/xdg:/etc/xdg
string XDG_CURRENT_DESKTOP Unity
string XDG_DATA_DIRS /usr/share/ubuntu:/usr/share/gnome:/usr/local/share/:/usr/share/
string XDG_GREETER_DATA_DIR /var/lib/lightdm-data/pcingola
string XDG_RUNTIME_DIR /run/user/1000
string XDG_SEAT seat0
string XDG_SEAT_PATH /org/freedesktop/DisplayManager/Seat0
string XDG_SESSION_ID c2
string XDG_SESSION_PATH /org/freedesktop/DisplayManager/Session0
string XDG_VTNR 7
string XFILESEARCHPATH /usr/dt/app-defaults/%L/Dt
string XMODIFIERS @im=ibus