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        Note that additional data was saved in multiqc_data when this report was generated.


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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

         Loading report..

        Report generated on 2017-06-27, 15:41 based on data in: /mnt/seq/polarisbioit/PolarisPool/SUREkids_data/FASTQC_Files


        General Statistics

        Showing 100/100 rows and 4/5 columns.
        Sample Name% Dups% GCLengthM Seqs
        CHH10085
        25.7%
        43%
        100 bp
        65.9
        CHH10086
        27.6%
        43%
        100 bp
        76.2
        CHH10087
        25.6%
        43%
        100 bp
        65.1
        CHH10856
        22.3%
        43%
        100 bp
        57.8
        CHH10857
        23.1%
        43%
        100 bp
        55.6
        CHH10858
        23.3%
        43%
        100 bp
        61.2
        CHH11484
        24.8%
        43%
        100 bp
        60.6
        CHH11485
        17.2%
        43%
        100 bp
        28.6
        CHH11486
        23.6%
        43%
        100 bp
        56.0
        CHH11655
        21.7%
        44%
        100 bp
        64.1
        CHH11656
        24.6%
        43%
        100 bp
        64.2
        CHH11657
        20.7%
        45%
        100 bp
        57.5
        CHH11658
        25.2%
        43%
        100 bp
        59.8
        CHH11659
        23.9%
        43%
        100 bp
        55.4
        CHH11660
        23.1%
        43%
        100 bp
        54.3
        CHH11661
        21.5%
        45%
        100 bp
        79.7
        CHH11662
        22.9%
        44%
        100 bp
        66.5
        CHH11663
        19.8%
        45%
        100 bp
        63.7
        CHH11664
        23.7%
        45%
        100 bp
        66.4
        CHH11665
        22.2%
        45%
        100 bp
        63.4
        CHH11666
        21.2%
        45%
        100 bp
        63.6
        CHH11667
        22.1%
        45%
        100 bp
        59.7
        CHH11668
        23.0%
        45%
        100 bp
        62.4
        CHH11669
        22.0%
        45%
        100 bp
        61.0
        CHH11670
        21.1%
        45%
        100 bp
        62.4
        CHH11671
        20.2%
        44%
        100 bp
        59.8
        CHH11673
        21.1%
        45%
        100 bp
        56.2
        CHH11674
        23.3%
        45%
        100 bp
        68.3
        CHH11675
        22.6%
        45%
        100 bp
        69.4
        CHH11682
        22.7%
        44%
        100 bp
        65.6
        CHH11683
        23.2%
        44%
        100 bp
        81.4
        CHH11684
        22.0%
        44%
        100 bp
        65.7
        CHH11685
        26.5%
        44%
        100 bp
        82.1
        CHH11686
        24.9%
        45%
        100 bp
        76.3
        CHH11687
        24.1%
        45%
        100 bp
        66.9
        CHH11688
        21.0%
        45%
        100 bp
        55.1
        CHH11689
        21.1%
        45%
        100 bp
        53.1
        CHH11690
        21.3%
        45%
        100 bp
        62.3
        CHH11691
        20.6%
        45%
        100 bp
        75.3
        CHH11692
        22.7%
        45%
        100 bp
        68.1
        CHH11693
        18.6%
        45%
        100 bp
        54.9
        CHH11694
        19.1%
        45%
        100 bp
        54.3
        CHH11695
        19.8%
        45%
        100 bp
        64.0
        CHH11696
        19.7%
        45%
        100 bp
        56.2
        CHH13722
        26.4%
        45%
        100 bp
        82.0
        CHH13732
        22.1%
        46%
        100 bp
        58.7
        CHH13733
        21.6%
        45%
        100 bp
        63.7
        CHH13734
        21.9%
        46%
        100 bp
        73.6
        CHH13735
        21.7%
        45%
        100 bp
        60.2
        CHH13736
        22.2%
        45%
        100 bp
        63.2
        CHH13737
        24.1%
        45%
        100 bp
        70.5
        CHH13738
        23.8%
        45%
        100 bp
        72.6
        CHH13739
        22.4%
        45%
        100 bp
        58.7
        CHH13740
        22.0%
        45%
        100 bp
        65.5
        CHH13741
        21.7%
        45%
        100 bp
        58.6
        CHH13742
        24.2%
        45%
        100 bp
        82.8
        CHH13743
        22.4%
        45%
        100 bp
        54.9
        CHH13744
        19.3%
        45%
        100 bp
        51.3
        CHH13745
        22.4%
        45%
        100 bp
        76.8
        CHH13746
        18.8%
        45%
        100 bp
        51.7
        CHH13747
        36.7%
        47%
        150 bp
        134.8
        CHH13748
        26.1%
        46%
        150 bp
        105.6
        CHH13749
        19.5%
        45%
        100 bp
        68.5
        CHH13750
        21.6%
        46%
        100 bp
        60.8
        CHH13751
        20.3%
        45%
        100 bp
        55.2
        CHH13752
        20.9%
        46%
        100 bp
        56.3
        CHH13753
        19.4%
        45%
        100 bp
        52.3
        CHH13754
        21.2%
        45%
        100 bp
        71.6
        CHH13755
        20.7%
        45%
        100 bp
        62.7
        CHH13756
        18.9%
        46%
        100 bp
        47.9
        CHH13757
        26.4%
        45%
        100 bp
        97.5
        CHH13758
        16.1%
        46%
        100 bp
        38.8
        CHH13759
        24.1%
        45%
        100 bp
        76.5
        CHH13760
        21.0%
        46%
        100 bp
        54.9
        CHH13761
        21.6%
        45%
        100 bp
        63.5
        CHH13762
        20.2%
        46%
        100 bp
        47.1
        CHH13763
        21.5%
        46%
        100 bp
        60.3
        CHH13764
        24.1%
        46%
        100 bp
        69.2
        CHH13765
        16.9%
        45%
        100 bp
        39.9
        CHH13766
        17.0%
        45%
        100 bp
        37.6
        CHH13767
        15.5%
        45%
        100 bp
        35.9
        CHH13768
        12.0%
        44%
        100 bp
        57.2
        CHH13832
        17.6%
        45%
        100 bp
        38.0
        CHH13833
        16.1%
        45%
        100 bp
        27.3
        CHH13834
        15.1%
        45%
        100 bp
        28.9
        CHH13835
        15.8%
        45%
        100 bp
        31.4
        CHH13836
        16.4%
        45%
        100 bp
        31.8
        CHH13837
        16.0%
        45%
        100 bp
        32.4
        CHH13838
        15.0%
        45%
        100 bp
        27.7
        CHH13839
        15.1%
        45%
        100 bp
        30.9
        CHH13840
        15.7%
        45%
        100 bp
        31.6
        CHH13841
        14.5%
        45%
        100 bp
        26.8
        CHH13842
        16.0%
        45%
        100 bp
        31.7
        CHH13843
        17.1%
        45%
        100 bp
        32.4
        CHH13844
        13.4%
        45%
        100 bp
        25.3
        CHH13845
        16.7%
        45%
        100 bp
        33.0
        CHH13846
        15.2%
        45%
        100 bp
        29.3
        CHH13847
        15.7%
        45%
        100 bp
        29.8
        CHH13848
        16.2%
        44%
        100 bp
        28.1
        CHH13849
        16.8%
        44%
        100 bp
        27.3

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        loading..

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        loading..

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        loading..

        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        loading..

        Sequence Length Distribution

        All samples have sequences of a single length (100bp , 150bp). See the General Statistics Table.


        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        loading..

        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        100 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        loading..