Nextflow workflow report

[${workflow.runName}] ${workflow.resume ? '(resumed run)' : ''}

<% if ( workflow.success && workflow.stats.ignoredCount ){ %>
Workflow execution completed successfully. One or more tasks reported an error condition.
<% } else if ( workflow.success ) { %>
Workflow execution completed successfully!
<% } else { %>

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: ${workflow.exitStatus}.

The full error message was:

${workflow.errorReport}
<% } %>
Run times
${workflow.start.format('dd-MMM-yyyy HH:mm:ss')} - ${workflow.complete.format('dd-MMM-yyyy HH:mm:ss')} (duration: ${workflow.duration})
  $workflow.stats.succeedCount succeeded  
  $workflow.stats.cachedCount cached  
  $workflow.stats.ignoredCount ignored  
  $workflow.stats.failedCount failed  
Nextflow command
${workflow.commandLine}
CPU-Hours
${workflow.stats.computeTimeFmt}
Launch directory
${workflow.launchDir}
Work directory
${workflow.workDir.toUriString()}
Project directory
${workflow.projectDir}
<% if (workflow.scriptName) { %>
Script name
${workflow.scriptName}
<% } %> <% if (workflow.scriptId) { %>
Script ID
${workflow.scriptId}
<% } %>
Workflow session
${workflow.sessionId}
<% if (workflow.repository) { %>
Workflow repository
${workflow.repository}, revision ${workflow.revision} (commit hash ${workflow.commitId})
<% } %>
Workflow profile
${workflow.profile}
<% if (workflow.container) { %>
Workflow container
${workflow.container}
Container engine
${workflow.containerEngine?:'-'}
<% } %>
Nextflow version
version ${workflow.nextflow.version}, build ${workflow.nextflow.build} (${workflow.nextflow.timestamp})

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)