nucChIP
Overview
Prerequisites and installation
Prerequisites
Installation on Linux
Example case
1. Preprocessing
Determining nucleosome positions
Assigning histone marks to individual nucleosomes
Command Line Utilites
Convert BAM to BED
Counts the number of overlapping between two BED files
Generate coverage over nucleosomes
Count reads per nucleosome
Produces coverage figures
Generate coverage over nucleosomes
Meges the rows of two BED files
Creates bedGraph file with the enriched regions given a signal and control, and expected counts files
nucChIP
Docs
»
Python Module Index
_
_
_nucChIP