Welcome to nucChIP’s documentation!¶
Contents:
- Overview
- Prerequisites and installation
- Example case
- Command Line Utilites
- Convert BAM to BED
- Counts the number of overlapping between two BED files
- Generate coverage over nucleosomes
- Count reads per nucleosome
- Produces coverage figures
- Generate coverage over nucleosomes
- Meges the rows of two BED files
- Creates bedGraph file with the enriched regions given a signal and control, and expected counts files
- _nucChIP.bootstrap(data, num_samples, statistic)¶
Returns bootstrap distribution.