nucChIP
  • Overview
  • Prerequisites and installation
    • Prerequisites
    • Installation on Linux
  • Example case
    • 1. Preprocessing
    • Determining nucleosome positions
    • Assigning histone marks to individual nucleosomes
  • Command Line Utilites
    • Convert BAM to BED
    • Counts the number of overlapping between two BED files
    • Generate coverage over nucleosomes
    • Count reads per nucleosome
    • Produces coverage figures
    • Generate coverage over nucleosomes
    • Meges the rows of two BED files
    • Creates bedGraph file with the enriched regions given a signal and control, and expected counts files
 
nucChIP
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© Copyright 2014, Marcelo Rivas-Astroza.

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