{% extends 'analysispage.html' %} {% load x_extras %} {% load static from staticfiles %} {% block title %}Family » {{ family }}{% endblock %} {% block links %} Project: {{ project }} {% endblock %} {% block innercontent %} {% include 'javascript.html' %} {% include 'family_warnings.html' %}

About This Family

Family ID
{{ family.family_id }}
{% if family.short_description %}
Short Description
{{ family.short_description }}
{% endif %} {% if user_is_admin %} Edit..
{% endif %} {% if family.pedigree_image %}
{% endif %}

Analysis

Status
{{ analysis_status_desc_and_icon.0 }} {% if analysis_status_json.date_saved %}
(set by {{ analysis_status_json.user }} {{ analysis_status_json.date_saved }}) {% endif %} {% if user_is_admin %}
Edit Status.. {% endif %}
{{ family.causal_inheritance_mode }} inheritance mode
Variants (VCF)
{% if family.get_data_status == 'loaded' %} Loaded {% endif %} {% if family.get_data_status == 'loading' %} Loading {% endif %} {% if family.get_data_status == 'not_loaded' %} Not loaded; needs to be refreshed {% endif %} {% if family.get_data_status == 'no_variants' %} No variant data {% endif %}
Tags and Notes For Family:
{% for tag in project.get_tags %}
{{ tag|args:family|call:'get_variant_tags'|length }} {{ tag.tag }}  
{% endfor %}

Read Visualization:
{% if family.num_individuals_with_read_data > 0 %} Available for {{ family.num_individuals_with_read_data }} individuals
  SHOW READS    
{% else %} Not available for this family   {% endif %}
{% if family.get_image_slides %}

Slides

{% endif %}
Analysis Options
Search for Causal Variants

Search for potentially causal variants in this pedigree.

{% if family.has_breakpoint_data %}
Search for Breakpoints of Structural Variants

Search for breakpoints indicative of potentially causal structural variants in this pedigree.

{% endif %}
{% if matchmaker_supported %}
{% if user_is_admin %}

Export to Matchmaker Exchange



The submitted individual's data will be shared with other centers of the matchmaker federated network. Given that all members of the family share the same genotype, and to avoid intra-family matching, only one member can be submitted.

Please select the family member with the most number of phenotypes.


{% if exported_to_matchmaker %}

Last export on:

{% for indiv, insert_time in exported_to_matchmaker.items %} {% endfor %}

{{ indiv }}  : {{ insert_time }}

{% else %}

Not in Matchmaker Exchange

{% endif %}

Search in the the Matchmaker Exchange federated network of centers to find other individuals with similar disorders.

{% endif %} {% endif %}
{% if family.about_family_content %}

Notes

{{ family.about_family_content|safe }}

Edit.. {% endif %}
{% if family.analysis_summary_content %}

Analysis Summary

{{ family.analysis_summary_content|safe }}

Edit.. {% endif %} {% if phenotips_supported %} {% endif %} {% for indiv in family.individual_set.all %} {% if phenotips_supported %} {% endif %} {% endfor %}
Individual Sex Affected Status Mother FatherPhenoTips
{% if indiv.nickname %} {{ indiv.nickname }} {% else %} {{ indiv.indiv_id }} {% endif %} {{ indiv.gender_display }} {{ indiv.affected_status_display }} {% if indiv.maternal_id %}{{ indiv.maternal_id }}{% else %}-{% endif %} {% if indiv.paternal_id %}{{ indiv.paternal_id }}{% else %}-{% endif %} {% if user_is_admin %} {% endif %}
{% endblock %}