{% extends 'analysispage.html' %} {% load static from staticfiles %} {% block title %}Family Coverage Report » {{ gene.symbol }}{% endblock %} {% block links %} Family: {{ family }} {% endblock %} {% block desc %}

This page contains details about the coverage across coding regions of this gene. For the purpose of coverage analysis, we categorize sequencing data as one of the following: [TODO: need more details]

The data below is organized by coding region. Here, the definition of a coding region is a region of the genome that has an exon that contributes to a protein coding exon. Since exons often overlap, asking for "the exons in a gene" can be misleading and/or confusing. So, we merge all overlapping exons into a single coding regions. However, a downside is that you can't refer to coding regions by number, as you would refer to "exon 8" of a gene. To map between an exon number and a coding region, you must cross reference their genomic coordinates.

{% endblock %} {% block innercontent %} {% include 'family_warnings.html' %}

Gene Info

Ensembl ID
{{ gene.gene_id }}
Chromosome
{{ gene.chr }}
Position
{{ gene.start }} - {{ gene.stop }}
Total Coding Size
{{ whole_gene.gene_coding_size }} bases

More info can be found on the gene page

Total Coverage

Cumulative coverage across all regions and all individuals in this family.

Summary By Individual

Coverage By Coding Region

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