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java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.Identifiable
uk.ac.ebi.jmzidml.model.mzidml.SpectrumIdentificationResult
public class SpectrumIdentificationResult
All identifications made from searching one spectrum. For PMF data, all peptide identifications will be listed underneath as SpectrumIdentificationItems. For MS/MS data, there will be ranked SpectrumIdentificationItems corresponding to possible different peptide IDs.
Java class for SpectrumIdentificationResultType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="SpectrumIdentificationResultType"> <complexContent> <extension base="{http://psidev.info/psi/pi/mzIdentML/1.1}IdentifiableType"> <sequence> <element name="SpectrumIdentificationItem" type="{http://psidev.info/psi/pi/mzIdentML/1.1}SpectrumIdentificationItemType" maxOccurs="unbounded"/> <group ref="{http://psidev.info/psi/pi/mzIdentML/1.1}ParamGroup" maxOccurs="unbounded" minOccurs="0"/> </sequence> <attribute name="spectrumID" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute name="spectraData_ref" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> </extension> </complexContent> </complexType>
Field Summary | |
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protected List<AbstractParam> |
paramGroup
|
protected SpectraData |
spectraData
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protected String |
spectraDataRef
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protected String |
spectrumID
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protected List<SpectrumIdentificationItem> |
spectrumIdentificationItem
|
Fields inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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id, name |
Constructor Summary | |
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SpectrumIdentificationResult()
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Method Summary | |
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List<CvParam> |
getCvParam()
Get the cvparams for spectrumidentificationresult |
List<AbstractParam> |
getParamGroup()
Scores or parameters associated with the SpectrumIdentificationResult (i.e the set of SpectrumIdentificationItems derived from one spectrum) e.g. |
SpectraData |
getSpectraData()
|
String |
getSpectraDataRef()
Gets the value of the spectraDataRef property. |
String |
getSpectrumID()
Gets the value of the spectrumID property. |
List<SpectrumIdentificationItem> |
getSpectrumIdentificationItem()
Gets the value of the spectrumIdentificationItem property. |
List<UserParam> |
getUserParam()
Get the userparams for spectrumidentificationresult |
void |
setSpectraData(SpectraData spectraData)
|
void |
setSpectrumID(String value)
Sets the value of the spectrumID property. |
Methods inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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getId, getName, setId, setName |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
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getHid |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected List<SpectrumIdentificationItem> spectrumIdentificationItem
protected List<AbstractParam> paramGroup
protected String spectrumID
protected String spectraDataRef
protected SpectraData spectraData
Constructor Detail |
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public SpectrumIdentificationResult()
Method Detail |
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public SpectraData getSpectraData()
public void setSpectraData(SpectraData spectraData)
public List<SpectrumIdentificationItem> getSpectrumIdentificationItem()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the spectrumIdentificationItem property.
For example, to add a new item, do as follows:
getSpectrumIdentificationItem().add(newItem);
Objects of the following type(s) are allowed in the list
SpectrumIdentificationItem
public List<AbstractParam> getParamGroup()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the paramGroup property.
For example, to add a new item, do as follows:
getParamGroup().add(newItem);
Objects of the following type(s) are allowed in the list
CvParam
UserParam
public String getSpectrumID()
String
public void setSpectrumID(String value)
value
- allowed object is
String
public String getSpectraDataRef()
String
public List<CvParam> getCvParam()
getCvParam
in interface CvParamListCapable
getCvParam
in interface ParamGroupCapable
public List<UserParam> getUserParam()
getUserParam
in interface ParamGroupCapable
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