uk.ac.ebi.jmzidml.xml.io
Class MzIdentMLMarshaller

java.lang.Object
  extended by uk.ac.ebi.jmzidml.xml.io.MzIdentMLMarshaller

public class MzIdentMLMarshaller
extends Object

Since:
0.2
Author:
Florian Reisinger Date: 20-Oct-2010

Constructor Summary
MzIdentMLMarshaller()
           
 
Method Summary
 String createAnalysisDataClosingTag()
           
 String createAnalysisDataStartTag()
           
 String createDataCollectionClosingTag()
           
 String createDataCollectionStartTag()
           
 String createMzIdentMLClosingTag()
           
 String createMzIdentMLStartTag(String id)
           
 String createProteinDetectionListClosingTag()
           
 String createProteinDetectionListStartTag(String id, String name)
           
 String createSpectrumIdentificationListClosingTag()
           
 String createSpectrumIdentificationListStartTag(String id, String name, Long numSeqSearched)
           
 String createXmlHeader()
           
<T extends MzIdentMLObject>
String
marshal(T object)
           
<T extends MzIdentMLObject>
void
marshal(T object, OutputStream os)
           
<T extends MzIdentMLObject>
void
marshal(T object, Writer out)
           
<T extends MzIdentMLObject>
String
marshall(T object)
          Deprecated. 
<T extends MzIdentMLObject>
void
marshall(T object, OutputStream os)
          Deprecated. 
<T extends MzIdentMLObject>
void
marshall(T object, Writer out)
          Deprecated. 
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

MzIdentMLMarshaller

public MzIdentMLMarshaller()
Method Detail

marshall

@Deprecated
public <T extends MzIdentMLObject> String marshall(T object)
Deprecated. 


marshal

public <T extends MzIdentMLObject> String marshal(T object)

marshall

@Deprecated
public <T extends MzIdentMLObject> void marshall(T object,
                                                            OutputStream os)
Deprecated. 


marshal

public <T extends MzIdentMLObject> void marshal(T object,
                                                OutputStream os)

marshall

@Deprecated
public <T extends MzIdentMLObject> void marshall(T object,
                                                            Writer out)
Deprecated. 


marshal

public <T extends MzIdentMLObject> void marshal(T object,
                                                Writer out)

createXmlHeader

public String createXmlHeader()

createMzIdentMLStartTag

public String createMzIdentMLStartTag(String id)

createMzIdentMLClosingTag

public String createMzIdentMLClosingTag()

createDataCollectionStartTag

public String createDataCollectionStartTag()

createDataCollectionClosingTag

public String createDataCollectionClosingTag()

createAnalysisDataStartTag

public String createAnalysisDataStartTag()

createAnalysisDataClosingTag

public String createAnalysisDataClosingTag()

createProteinDetectionListStartTag

public String createProteinDetectionListStartTag(String id,
                                                 String name)

createProteinDetectionListClosingTag

public String createProteinDetectionListClosingTag()

createSpectrumIdentificationListStartTag

public String createSpectrumIdentificationListStartTag(String id,
                                                       String name,
                                                       Long numSeqSearched)

createSpectrumIdentificationListClosingTag

public String createSpectrumIdentificationListClosingTag()


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