|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use Identifiable | |
---|---|
uk.ac.ebi.jmzidml.model | |
uk.ac.ebi.jmzidml.model.mzidml |
Uses of Identifiable in uk.ac.ebi.jmzidml.model |
---|
Subclasses of Identifiable in uk.ac.ebi.jmzidml.model | |
---|---|
class |
AbstractIdentifiableParamGroup
|
Uses of Identifiable in uk.ac.ebi.jmzidml.model.mzidml |
---|
Subclasses of Identifiable in uk.ac.ebi.jmzidml.model.mzidml | |
---|---|
class |
AbstractContact
A contact is either a person or an organization. |
class |
AnalysisSoftware
The software used for performing the analyses. |
class |
BibliographicReference
Represents bibliographic references. |
class |
DBSequence
A database sequence from the specified SearchDatabase (nucleic acid or amino acid). |
class |
Enzyme
The details of an individual cleavage enzyme should be provided by giving a regular expression or a CV term if a "standard" enzyme cleavage has been performed. |
class |
ExternalData
Data external to the XML instance document. |
class |
MassTable
The masses of residues used in the search. |
class |
Measure
References to CV terms defining the measures about product ions to be reported in SpectrumIdentificationItem |
class |
MzIdentML
The upper-most hierarchy level of mzIdentML with sub-containers for example describing software, protocols and search results (spectrum identifications or protein detection results). |
class |
Organization
Organizations are entities like companies, universities, government agencies. |
class |
Peptide
One (poly)peptide (a sequence with modifications). |
class |
PeptideEvidence
PeptideEvidence links a specific Peptide element to a specific position in a DBSequence. |
class |
Person
A person's name and contact details. |
class |
ProteinAmbiguityGroup
A set of logically related results from a protein detection, for example to represent conflicting assignments of peptides to proteins. |
class |
ProteinDetection
An Analysis which assembles a set of peptides (e.g. |
class |
ProteinDetectionHypothesis
A single result of the ProteinDetection analysis (i.e. |
class |
ProteinDetectionList
The protein list resulting from a protein detection process. |
class |
ProteinDetectionProtocol
The parameters and settings of a ProteinDetection process. |
class |
ProtocolApplication
The use of a protocol with the requisite Parameters and ParameterValues. |
class |
Provider
The provider of the document in terms of the Contact and the software the produced the document instance. |
class |
Sample
A description of the sample analysed by mass spectrometry using CVParams or UserParams. |
class |
SearchDatabase
A database for searching mass spectra. |
class |
SourceFile
A file from which this mzIdentML instance was created. |
class |
SpectraData
A data set containing spectra data (consisting of one or more spectra). |
class |
SpectrumIdentification
An Analysis which tries to identify peptides in input spectra, referencing the database searched, the input spectra, the output results and the protocol that is run. |
class |
SpectrumIdentificationItem
An identification of a single (poly)peptide, resulting from querying an input spectra, along with the set of confidence values for that identification. |
class |
SpectrumIdentificationList
Represents the set of all search results from SpectrumIdentification. |
class |
SpectrumIdentificationProtocol
The parameters and settings of a SpectrumIdentification analysis. |
class |
SpectrumIdentificationResult
All identifications made from searching one spectrum. |
class |
TranslationTable
The table used to translate codons into nucleic acids e.g. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |