Uses of Interface
uk.ac.ebi.jmzidml.model.CvParamListCapable

Packages that use CvParamListCapable
uk.ac.ebi.jmzidml.model   
uk.ac.ebi.jmzidml.model.mzidml   
 

Uses of CvParamListCapable in uk.ac.ebi.jmzidml.model
 

Subinterfaces of CvParamListCapable in uk.ac.ebi.jmzidml.model
 interface ParamGroupCapable
          Defines the methods needed by the Marshal/Unmarshal listeners to split a List into respective List and List and methods used to replace the CvParam/UserParam classes with their respective subclasses.
 

Classes in uk.ac.ebi.jmzidml.model that implement CvParamListCapable
 class AbstractIdentifiableParamGroup
           
 class AbstractParamGroup
           
 

Uses of CvParamListCapable in uk.ac.ebi.jmzidml.model.mzidml
 

Classes in uk.ac.ebi.jmzidml.model.mzidml that implement CvParamListCapable
 class AbstractContact
          A contact is either a person or an organization.
 class AmbiguousResidue
          Ambiguous residues e.g.
 class DBSequence
          A database sequence from the specified SearchDatabase (nucleic acid or amino acid).
 class MassTable
          The masses of residues used in the search.
 class Measure
          References to CV terms defining the measures about product ions to be reported in SpectrumIdentificationItem
 class Modification
          A molecule modification specification.
 class Organization
          Organizations are entities like companies, universities, government agencies.
 class Peptide
          One (poly)peptide (a sequence with modifications).
 class PeptideEvidence
          PeptideEvidence links a specific Peptide element to a specific position in a DBSequence.
 class Person
          A person's name and contact details.
 class ProteinAmbiguityGroup
          A set of logically related results from a protein detection, for example to represent conflicting assignments of peptides to proteins.
 class ProteinDetectionHypothesis
          A single result of the ProteinDetection analysis (i.e.
 class ProteinDetectionList
          The protein list resulting from a protein detection process.
 class Sample
          A description of the sample analysed by mass spectrometry using CVParams or UserParams.
 class SearchDatabase
          A database for searching mass spectra.
 class SourceFile
          A file from which this mzIdentML instance was created.
 class SpecificityRules
          The specificity rules of the searched modification including for example the probability of a modification's presence or peptide or protein termini.
 class SpectrumIdentificationItem
          An identification of a single (poly)peptide, resulting from querying an input spectra, along with the set of confidence values for that identification.
 class SpectrumIdentificationList
          Represents the set of all search results from SpectrumIdentification.
 class SpectrumIdentificationResult
          All identifications made from searching one spectrum.
 class Tolerance
          The tolerance of the search given as a plus and minus value with units.
 class TranslationTable
          The table used to translate codons into nucleic acids e.g.
 



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