uk.ac.ebi.jmzidml.model.mzidml
Class SequenceCollection

java.lang.Object
  extended by uk.ac.ebi.jmzidml.model.MzIdentMLObject
      extended by uk.ac.ebi.jmzidml.model.mzidml.SequenceCollection
All Implemented Interfaces:
Serializable

public class SequenceCollection
extends MzIdentMLObject
implements Serializable

The collection of sequences (DBSequence or Peptide) identified and their relationship between each other (PeptideEvidence) to be referenced elsewhere in the results.

Java class for SequenceCollectionType complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="SequenceCollectionType">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <element name="DBSequence" type="{http://psidev.info/psi/pi/mzIdentML/1.1}DBSequenceType" maxOccurs="unbounded"/>
         <element name="Peptide" type="{http://psidev.info/psi/pi/mzIdentML/1.1}PeptideType" maxOccurs="unbounded" minOccurs="0"/>
         <element name="PeptideEvidence" type="{http://psidev.info/psi/pi/mzIdentML/1.1}PeptideEvidenceType" maxOccurs="unbounded" minOccurs="0"/>
       </sequence>
     </restriction>
   </complexContent>
 </complexType>
 

See Also:
Serialized Form

Field Summary
protected  List<DBSequence> dbSequence
           
protected  List<Peptide> peptide
           
protected  List<PeptideEvidence> peptideEvidence
           
 
Constructor Summary
SequenceCollection()
           
 
Method Summary
 List<DBSequence> getDBSequence()
          Gets the value of the dbSequence property.
 List<Peptide> getPeptide()
          Gets the value of the peptide property.
 List<PeptideEvidence> getPeptideEvidence()
          Gets the value of the peptideEvidence property.
 
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject
getHid
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

dbSequence

protected List<DBSequence> dbSequence

peptide

protected List<Peptide> peptide

peptideEvidence

protected List<PeptideEvidence> peptideEvidence
Constructor Detail

SequenceCollection

public SequenceCollection()
Method Detail

getDBSequence

public List<DBSequence> getDBSequence()
Gets the value of the dbSequence property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the dbSequence property.

For example, to add a new item, do as follows:

    getDBSequence().add(newItem);
 

Objects of the following type(s) are allowed in the list DBSequence


getPeptide

public List<Peptide> getPeptide()
Gets the value of the peptide property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the peptide property.

For example, to add a new item, do as follows:

    getPeptide().add(newItem);
 

Objects of the following type(s) are allowed in the list Peptide


getPeptideEvidence

public List<PeptideEvidence> getPeptideEvidence()
Gets the value of the peptideEvidence property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the peptideEvidence property.

For example, to add a new item, do as follows:

    getPeptideEvidence().add(newItem);
 

Objects of the following type(s) are allowed in the list PeptideEvidence



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