uk.ac.ebi.jmzidml.model.mzidml
Class AnalysisCollection

java.lang.Object
  extended by uk.ac.ebi.jmzidml.model.MzIdentMLObject
      extended by uk.ac.ebi.jmzidml.model.mzidml.AnalysisCollection
All Implemented Interfaces:
Serializable

public class AnalysisCollection
extends MzIdentMLObject
implements Serializable

The analyses performed to get the results, which map the input and output data sets. Analyses are for example: SpectrumIdentification (resulting in peptides) or ProteinDetection (assemble proteins from peptides).

Java class for AnalysisCollectionType complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="AnalysisCollectionType">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <element name="SpectrumIdentification" type="{http://psidev.info/psi/pi/mzIdentML/1.1}SpectrumIdentificationType" maxOccurs="unbounded"/>
         <element name="ProteinDetection" type="{http://psidev.info/psi/pi/mzIdentML/1.1}ProteinDetectionType" minOccurs="0"/>
       </sequence>
     </restriction>
   </complexContent>
 </complexType>
 

See Also:
Serialized Form

Field Summary
protected  ProteinDetection proteinDetection
           
protected  List<SpectrumIdentification> spectrumIdentification
           
 
Constructor Summary
AnalysisCollection()
           
 
Method Summary
 ProteinDetection getProteinDetection()
          Gets the value of the proteinDetection property.
 List<SpectrumIdentification> getSpectrumIdentification()
          Gets the value of the spectrumIdentification property.
 void setProteinDetection(ProteinDetection value)
          Sets the value of the proteinDetection property.
 
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject
getHid
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

spectrumIdentification

protected List<SpectrumIdentification> spectrumIdentification

proteinDetection

protected ProteinDetection proteinDetection
Constructor Detail

AnalysisCollection

public AnalysisCollection()
Method Detail

getSpectrumIdentification

public List<SpectrumIdentification> getSpectrumIdentification()
Gets the value of the spectrumIdentification property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the spectrumIdentification property.

For example, to add a new item, do as follows:

    getSpectrumIdentification().add(newItem);
 

Objects of the following type(s) are allowed in the list SpectrumIdentification

Returns:
spectrumIdentification

getProteinDetection

public ProteinDetection getProteinDetection()
Gets the value of the proteinDetection property.

Returns:
possible object is ProteinDetection

setProteinDetection

public void setProteinDetection(ProteinDetection value)
Sets the value of the proteinDetection property.

Parameters:
value - allowed object is ProteinDetection


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