|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.Identifiable
uk.ac.ebi.jmzidml.model.mzidml.DBSequence
public class DBSequence
A database sequence from the specified SearchDatabase (nucleic acid or amino acid). If the sequence is nucleic acid, the source nucleic acid sequence should be given in the seq attribute rather than a translated sequence.
Java class for DBSequenceType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="DBSequenceType"> <complexContent> <extension base="{http://psidev.info/psi/pi/mzIdentML/1.1}IdentifiableType"> <sequence> <element name="Seq" type="{http://psidev.info/psi/pi/mzIdentML/1.1}sequence" minOccurs="0"/> <group ref="{http://psidev.info/psi/pi/mzIdentML/1.1}ParamGroup" maxOccurs="unbounded" minOccurs="0"/> </sequence> <attribute name="length" type="{http://www.w3.org/2001/XMLSchema}int" /> <attribute name="searchDatabase_ref" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> </extension> </complexContent> </complexType>
Field Summary | |
---|---|
protected String |
accession
|
protected Integer |
length
|
protected List<AbstractParam> |
paramGroup
|
protected SearchDatabase |
searchDatabase
|
protected String |
searchDatabaseRef
|
protected String |
seq
|
Fields inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
---|
id, name |
Constructor Summary | |
---|---|
DBSequence()
|
Method Summary | |
---|---|
String |
getAccession()
Gets the value of the accession property. |
List<CvParam> |
getCvParam()
|
Integer |
getLength()
Gets the value of the length property. |
List<AbstractParam> |
getParamGroup()
Additional descriptors for the sequence, such as taxon, description line etc.Gets the value of the paramGroup property. |
SearchDatabase |
getSearchDatabase()
|
String |
getSearchDatabaseRef()
Gets the value of the searchDatabaseRef property. |
String |
getSeq()
Gets the value of the seq property. |
List<UserParam> |
getUserParam()
|
void |
setAccession(String value)
Sets the value of the accession property. |
void |
setLength(Integer value)
Sets the value of the length property. |
void |
setSearchDatabase(SearchDatabase searchDatabase)
|
void |
setSeq(String value)
Sets the value of the seq property. |
Methods inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
---|
getId, getName, setId, setName |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
---|
getHid |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
---|
protected String seq
protected List<AbstractParam> paramGroup
protected Integer length
protected String searchDatabaseRef
protected String accession
protected SearchDatabase searchDatabase
Constructor Detail |
---|
public DBSequence()
Method Detail |
---|
public String getSeq()
String
public void setSeq(String value)
value
- allowed object is
String
public List<AbstractParam> getParamGroup()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the paramGroup property.
For example, to add a new item, do as follows:
getParamGroup().add(newItem);
Objects of the following type(s) are allowed in the list
UserParam
CvParam
public Integer getLength()
Integer
public void setLength(Integer value)
value
- allowed object is
Integer
public String getSearchDatabaseRef()
String
public String getAccession()
String
public void setAccession(String value)
value
- allowed object is
String
public SearchDatabase getSearchDatabase()
public void setSearchDatabase(SearchDatabase searchDatabase)
public List<CvParam> getCvParam()
getCvParam
in interface CvParamListCapable
getCvParam
in interface ParamGroupCapable
public List<UserParam> getUserParam()
getUserParam
in interface ParamGroupCapable
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |