uk.ac.ebi.jmzidml.model.mzidml
Class ProteinDetectionList

java.lang.Object
  extended by uk.ac.ebi.jmzidml.model.MzIdentMLObject
      extended by uk.ac.ebi.jmzidml.model.mzidml.Identifiable
          extended by uk.ac.ebi.jmzidml.model.mzidml.ProteinDetectionList
All Implemented Interfaces:
Serializable, CvParamListCapable, ParamGroupCapable

public class ProteinDetectionList
extends Identifiable
implements Serializable, ParamGroupCapable

The protein list resulting from a protein detection process.

Java class for ProteinDetectionListType complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="ProteinDetectionListType">
   <complexContent>
     <extension base="{http://psidev.info/psi/pi/mzIdentML/1.1}IdentifiableType">
       <sequence>
         <element name="ProteinAmbiguityGroup" type="{http://psidev.info/psi/pi/mzIdentML/1.1}ProteinAmbiguityGroupType" maxOccurs="unbounded" minOccurs="0"/>
         <group ref="{http://psidev.info/psi/pi/mzIdentML/1.1}ParamGroup" maxOccurs="unbounded" minOccurs="0"/>
       </sequence>
     </extension>
   </complexContent>
 </complexType>
 

See Also:
Serialized Form

Field Summary
protected  List<AbstractParam> paramGroup
           
protected  List<ProteinAmbiguityGroup> proteinAmbiguityGroup
           
 
Fields inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable
id, name
 
Constructor Summary
ProteinDetectionList()
           
 
Method Summary
 List<CvParam> getCvParam()
           
 List<AbstractParam> getParamGroup()
          Scores or output parameters associated with the whole ProteinDetectionList Gets the value of the paramGroup property.
 List<ProteinAmbiguityGroup> getProteinAmbiguityGroup()
          Gets the value of the proteinAmbiguityGroup property.
 List<UserParam> getUserParam()
           
 
Methods inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable
getId, getName, setId, setName
 
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject
getHid
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

proteinAmbiguityGroup

protected List<ProteinAmbiguityGroup> proteinAmbiguityGroup

paramGroup

protected List<AbstractParam> paramGroup
Constructor Detail

ProteinDetectionList

public ProteinDetectionList()
Method Detail

getProteinAmbiguityGroup

public List<ProteinAmbiguityGroup> getProteinAmbiguityGroup()
Gets the value of the proteinAmbiguityGroup property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the proteinAmbiguityGroup property.

For example, to add a new item, do as follows:

    getProteinAmbiguityGroup().add(newItem);
 

Objects of the following type(s) are allowed in the list ProteinAmbiguityGroup


getParamGroup

public List<AbstractParam> getParamGroup()
Scores or output parameters associated with the whole ProteinDetectionList Gets the value of the paramGroup property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the paramGroup property.

For example, to add a new item, do as follows:

    getParamGroup().add(newItem);
 

Objects of the following type(s) are allowed in the list CvParam UserParam


getCvParam

public List<CvParam> getCvParam()
Specified by:
getCvParam in interface CvParamListCapable
Specified by:
getCvParam in interface ParamGroupCapable
Returns:
A List of CvParam objects.

getUserParam

public List<UserParam> getUserParam()
Specified by:
getUserParam in interface ParamGroupCapable


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