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java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.SequenceCollection
public class SequenceCollection
The collection of sequences (DBSequence or Peptide) identified and their relationship between each other (PeptideEvidence) to be referenced elsewhere in the results.
Java class for SequenceCollectionType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="SequenceCollectionType"> <complexContent> <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> <sequence> <element name="DBSequence" type="{http://psidev.info/psi/pi/mzIdentML/1.1}DBSequenceType" maxOccurs="unbounded"/> <element name="Peptide" type="{http://psidev.info/psi/pi/mzIdentML/1.1}PeptideType" maxOccurs="unbounded" minOccurs="0"/> <element name="PeptideEvidence" type="{http://psidev.info/psi/pi/mzIdentML/1.1}PeptideEvidenceType" maxOccurs="unbounded" minOccurs="0"/> </sequence> </restriction> </complexContent> </complexType>
Field Summary | |
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protected List<DBSequence> |
dbSequence
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protected List<Peptide> |
peptide
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protected List<PeptideEvidence> |
peptideEvidence
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Constructor Summary | |
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SequenceCollection()
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Method Summary | |
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List<DBSequence> |
getDBSequence()
Gets the value of the dbSequence property. |
List<Peptide> |
getPeptide()
Gets the value of the peptide property. |
List<PeptideEvidence> |
getPeptideEvidence()
Gets the value of the peptideEvidence property. |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
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getHid |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected List<DBSequence> dbSequence
protected List<Peptide> peptide
protected List<PeptideEvidence> peptideEvidence
Constructor Detail |
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public SequenceCollection()
Method Detail |
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public List<DBSequence> getDBSequence()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the dbSequence property.
For example, to add a new item, do as follows:
getDBSequence().add(newItem);
Objects of the following type(s) are allowed in the list
DBSequence
public List<Peptide> getPeptide()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the peptide property.
For example, to add a new item, do as follows:
getPeptide().add(newItem);
Objects of the following type(s) are allowed in the list
Peptide
public List<PeptideEvidence> getPeptideEvidence()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the peptideEvidence property.
For example, to add a new item, do as follows:
getPeptideEvidence().add(newItem);
Objects of the following type(s) are allowed in the list
PeptideEvidence
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