uk.ac.ebi.jmzidml.model.mzidml
Class ProteinAmbiguityGroup

java.lang.Object
  extended by uk.ac.ebi.jmzidml.model.MzIdentMLObject
      extended by uk.ac.ebi.jmzidml.model.mzidml.Identifiable
          extended by uk.ac.ebi.jmzidml.model.mzidml.ProteinAmbiguityGroup
All Implemented Interfaces:
Serializable, CvParamListCapable, ParamGroupCapable

public class ProteinAmbiguityGroup
extends Identifiable
implements Serializable, ParamGroupCapable

A set of logically related results from a protein detection, for example to represent conflicting assignments of peptides to proteins.

Java class for ProteinAmbiguityGroupType complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="ProteinAmbiguityGroupType">
   <complexContent>
     <extension base="{http://psidev.info/psi/pi/mzIdentML/1.1}IdentifiableType">
       <sequence>
         <element name="ProteinDetectionHypothesis" type="{http://psidev.info/psi/pi/mzIdentML/1.1}ProteinDetectionHypothesisType" maxOccurs="unbounded"/>
         <group ref="{http://psidev.info/psi/pi/mzIdentML/1.1}ParamGroup" maxOccurs="unbounded" minOccurs="0"/>
       </sequence>
     </extension>
   </complexContent>
 </complexType>
 

See Also:
Serialized Form

Field Summary
protected  List<AbstractParam> paramGroup
           
protected  List<ProteinDetectionHypothesis> proteinDetectionHypothesis
           
 
Fields inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable
id, name
 
Constructor Summary
ProteinAmbiguityGroup()
           
 
Method Summary
 List<CvParam> getCvParam()
           
 List<AbstractParam> getParamGroup()
          Scores or parameters associated with the ProteinAmbiguityGroup.Gets the value of the paramGroup property.
 List<ProteinDetectionHypothesis> getProteinDetectionHypothesis()
          Gets the value of the proteinDetectionHypothesis property.
 List<UserParam> getUserParam()
           
 
Methods inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable
getId, getName, setId, setName
 
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject
getHid
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

proteinDetectionHypothesis

protected List<ProteinDetectionHypothesis> proteinDetectionHypothesis

paramGroup

protected List<AbstractParam> paramGroup
Constructor Detail

ProteinAmbiguityGroup

public ProteinAmbiguityGroup()
Method Detail

getProteinDetectionHypothesis

public List<ProteinDetectionHypothesis> getProteinDetectionHypothesis()
Gets the value of the proteinDetectionHypothesis property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the proteinDetectionHypothesis property.

For example, to add a new item, do as follows:

    getProteinDetectionHypothesis().add(newItem);
 

Objects of the following type(s) are allowed in the list ProteinDetectionHypothesis


getParamGroup

public List<AbstractParam> getParamGroup()
Scores or parameters associated with the ProteinAmbiguityGroup.Gets the value of the paramGroup property.

This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the paramGroup property.

For example, to add a new item, do as follows:

    getParamGroup().add(newItem);
 

Objects of the following type(s) are allowed in the list UserParam CvParam


getCvParam

public List<CvParam> getCvParam()
Specified by:
getCvParam in interface CvParamListCapable
Specified by:
getCvParam in interface ParamGroupCapable
Returns:
A List of CvParam objects.

getUserParam

public List<UserParam> getUserParam()
Specified by:
getUserParam in interface ParamGroupCapable


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