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java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.SearchModification
public class SearchModification
Specification of a search modification as parameter for a spectra search. Contains the name of the modification, the mass, the specificity and whether it is a static modification.
Java class for SearchModificationType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="SearchModificationType"> <complexContent> <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> <sequence> <element name="SpecificityRules" type="{http://psidev.info/psi/pi/mzIdentML/1.1}SpecificityRulesType" maxOccurs="unbounded" minOccurs="0"/> <element name="cvParam" type="{http://psidev.info/psi/pi/mzIdentML/1.1}CVParamType" maxOccurs="unbounded"/> </sequence> <attribute name="fixedMod" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" /> <attribute name="massDelta" use="required" type="{http://www.w3.org/2001/XMLSchema}float" /> <attribute name="residues" use="required" type="{http://psidev.info/psi/pi/mzIdentML/1.1}listOfCharsOrAny" /> </restriction> </complexContent> </complexType>
Field Summary | |
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protected List<CvParam> |
cvParam
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protected boolean |
fixedMod
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protected float |
massDelta
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protected List<String> |
residues
|
protected List<SpecificityRules> |
specificityRules
|
Constructor Summary | |
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SearchModification()
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Method Summary | |
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List<CvParam> |
getCvParam()
Gets the value of the cvParam property. |
float |
getMassDelta()
Gets the value of the massDelta property. |
List<String> |
getResidues()
Gets the value of the residues property. |
List<SpecificityRules> |
getSpecificityRules()
Gets the value of the specificityRules property. |
boolean |
isFixedMod()
Gets the value of the fixedMod property. |
void |
setFixedMod(boolean value)
Sets the value of the fixedMod property. |
void |
setMassDelta(float value)
Sets the value of the massDelta property. |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
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getHid |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected List<SpecificityRules> specificityRules
protected List<CvParam> cvParam
protected boolean fixedMod
protected float massDelta
protected List<String> residues
Constructor Detail |
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public SearchModification()
Method Detail |
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public List<SpecificityRules> getSpecificityRules()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the specificityRules property.
For example, to add a new item, do as follows:
getSpecificityRules().add(newItem);
Objects of the following type(s) are allowed in the list
SpecificityRules
public List<CvParam> getCvParam()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the cvParam property.
For example, to add a new item, do as follows:
getCvParam().add(newItem);
Objects of the following type(s) are allowed in the list
CvParam
public boolean isFixedMod()
public void setFixedMod(boolean value)
public float getMassDelta()
public void setMassDelta(float value)
public List<String> getResidues()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the residues property.
For example, to add a new item, do as follows:
getResidues().add(newItem);
Objects of the following type(s) are allowed in the list
String
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