uk.ac.ebi.jmzidml.model.mzidml
Class ObjectFactory

java.lang.Object
  extended by uk.ac.ebi.jmzidml.model.mzidml.ObjectFactory

public class ObjectFactory
extends Object

This object contains factory methods for each Java content interface and Java element interface generated in the uk.ac.ebi.jmzidml.model.mzidml package.

An ObjectFactory allows you to programatically construct new instances of the Java representation for XML content. The Java representation of XML content can consist of schema derived interfaces and classes representing the binding of schema type definitions, element declarations and model groups. Factory methods for each of these are provided in this class.


Constructor Summary
ObjectFactory()
          Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: uk.ac.ebi.jmzidml.model.mzidml
 
Method Summary
 Affiliation createAffiliation()
          Create an instance of Affiliation
 AmbiguousResidue createAmbiguousResidue()
          Create an instance of AmbiguousResidue
 AnalysisCollection createAnalysisCollection()
          Create an instance of AnalysisCollection
 AnalysisData createAnalysisData()
          Create an instance of AnalysisData
 AnalysisProtocolCollection createAnalysisProtocolCollection()
          Create an instance of AnalysisProtocolCollection
 AnalysisSampleCollection createAnalysisSampleCollection()
          Create an instance of AnalysisSampleCollection
 AnalysisSoftware createAnalysisSoftware()
          Create an instance of AnalysisSoftware
 AnalysisSoftwareList createAnalysisSoftwareList()
          Create an instance of AnalysisSoftwareList
 AuditCollection createAuditCollection()
          Create an instance of AuditCollection
 BibliographicReference createBibliographicReference()
          Create an instance of BibliographicReference
 ContactRole createContactRole()
          Create an instance of ContactRole
 Cv createCv()
          Create an instance of Cv
 CvList createCvList()
          Create an instance of CvList
 CvParam createCvParam()
          Create an instance of CvParam
 DatabaseFilters createDatabaseFilters()
          Create an instance of DatabaseFilters
 DatabaseTranslation createDatabaseTranslation()
          Create an instance of DatabaseTranslation
 DataCollection createDataCollection()
          Create an instance of DataCollection
 DBSequence createDBSequence()
          Create an instance of DBSequence
 Enzyme createEnzyme()
          Create an instance of Enzyme
 Enzymes createEnzymes()
          Create an instance of Enzymes
 ExternalData createExternalData()
          Create an instance of ExternalData
 FileFormat createFileFormat()
          Create an instance of FileFormat
 Filter createFilter()
          Create an instance of Filter
 FragmentArray createFragmentArray()
          Create an instance of FragmentArray
 Fragmentation createFragmentation()
          Create an instance of Fragmentation
 FragmentationTable createFragmentationTable()
          Create an instance of FragmentationTable
 Inputs createInputs()
          Create an instance of Inputs
 InputSpectra createInputSpectra()
          Create an instance of InputSpectra
 InputSpectrumIdentifications createInputSpectrumIdentifications()
          Create an instance of InputSpectrumIdentifications
 IonType createIonType()
          Create an instance of IonType
 MassTable createMassTable()
          Create an instance of MassTable
 Measure createMeasure()
          Create an instance of Measure
 Modification createModification()
          Create an instance of Modification
 ModificationParams createModificationParams()
          Create an instance of ModificationParams
 MzIdentML createMzIdentML()
          Create an instance of MzIdentML
 javax.xml.bind.JAXBElement<MzIdentML> createMzIdentML(MzIdentML value)
          Create an instance of JAXBElement<MzIdentML>}
 Organization createOrganization()
          Create an instance of Organization
 Param createParam()
          Create an instance of Param
 ParamList createParamList()
          Create an instance of ParamList
 ParentOrganization createParentOrganization()
          Create an instance of ParentOrganization
 Peptide createPeptide()
          Create an instance of Peptide
 PeptideEvidence createPeptideEvidence()
          Create an instance of PeptideEvidence
 PeptideEvidenceRef createPeptideEvidenceRef()
          Create an instance of PeptideEvidenceRef
 PeptideHypothesis createPeptideHypothesis()
          Create an instance of PeptideHypothesis
 Person createPerson()
          Create an instance of Person
 ProteinAmbiguityGroup createProteinAmbiguityGroup()
          Create an instance of ProteinAmbiguityGroup
 ProteinDetection createProteinDetection()
          Create an instance of ProteinDetection
 ProteinDetectionHypothesis createProteinDetectionHypothesis()
          Create an instance of ProteinDetectionHypothesis
 ProteinDetectionList createProteinDetectionList()
          Create an instance of ProteinDetectionList
 ProteinDetectionProtocol createProteinDetectionProtocol()
          Create an instance of ProteinDetectionProtocol
 Provider createProvider()
          Create an instance of Provider
 Residue createResidue()
          Create an instance of Residue
 Role createRole()
          Create an instance of Role
 Sample createSample()
          Create an instance of Sample
 SearchDatabase createSearchDatabase()
          Create an instance of SearchDatabase
 SearchDatabaseRef createSearchDatabaseRef()
          Create an instance of SearchDatabaseRef
 SearchModification createSearchModification()
          Create an instance of SearchModification
 SequenceCollection createSequenceCollection()
          Create an instance of SequenceCollection
 SourceFile createSourceFile()
          Create an instance of SourceFile
 SpecificityRules createSpecificityRules()
          Create an instance of SpecificityRules
 SpectraData createSpectraData()
          Create an instance of SpectraData
 SpectrumIdentification createSpectrumIdentification()
          Create an instance of SpectrumIdentification
 SpectrumIdentificationItem createSpectrumIdentificationItem()
          Create an instance of SpectrumIdentificationItem
 SpectrumIdentificationItemRef createSpectrumIdentificationItemRef()
          Create an instance of SpectrumIdentificationItemRef
 SpectrumIdentificationList createSpectrumIdentificationList()
          Create an instance of SpectrumIdentificationList
 SpectrumIdentificationProtocol createSpectrumIdentificationProtocol()
          Create an instance of SpectrumIdentificationProtocol
 SpectrumIdentificationResult createSpectrumIdentificationResult()
          Create an instance of SpectrumIdentificationResult
 SpectrumIDFormat createSpectrumIDFormat()
          Create an instance of SpectrumIDFormat
 SubSample createSubSample()
          Create an instance of SubSample
 SubstitutionModification createSubstitutionModification()
          Create an instance of SubstitutionModification
 Tolerance createTolerance()
          Create an instance of Tolerance
 TranslationTable createTranslationTable()
          Create an instance of TranslationTable
 UserParam createUserParam()
          Create an instance of UserParam
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ObjectFactory

public ObjectFactory()
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: uk.ac.ebi.jmzidml.model.mzidml

Method Detail

createProteinDetectionHypothesis

public ProteinDetectionHypothesis createProteinDetectionHypothesis()
Create an instance of ProteinDetectionHypothesis


createOrganization

public Organization createOrganization()
Create an instance of Organization


createAnalysisSoftware

public AnalysisSoftware createAnalysisSoftware()
Create an instance of AnalysisSoftware


createPeptideEvidenceRef

public PeptideEvidenceRef createPeptideEvidenceRef()
Create an instance of PeptideEvidenceRef


createInputSpectra

public InputSpectra createInputSpectra()
Create an instance of InputSpectra


createContactRole

public ContactRole createContactRole()
Create an instance of ContactRole


createExternalData

public ExternalData createExternalData()
Create an instance of ExternalData


createProteinDetectionProtocol

public ProteinDetectionProtocol createProteinDetectionProtocol()
Create an instance of ProteinDetectionProtocol


createSpectrumIdentificationProtocol

public SpectrumIdentificationProtocol createSpectrumIdentificationProtocol()
Create an instance of SpectrumIdentificationProtocol


createAnalysisSampleCollection

public AnalysisSampleCollection createAnalysisSampleCollection()
Create an instance of AnalysisSampleCollection


createProteinDetection

public ProteinDetection createProteinDetection()
Create an instance of ProteinDetection


createDatabaseFilters

public DatabaseFilters createDatabaseFilters()
Create an instance of DatabaseFilters


createModification

public Modification createModification()
Create an instance of Modification


createParam

public Param createParam()
Create an instance of Param


createCvParam

public CvParam createCvParam()
Create an instance of CvParam


createProteinDetectionList

public ProteinDetectionList createProteinDetectionList()
Create an instance of ProteinDetectionList


createSequenceCollection

public SequenceCollection createSequenceCollection()
Create an instance of SequenceCollection


createInputs

public Inputs createInputs()
Create an instance of Inputs


createSearchModification

public SearchModification createSearchModification()
Create an instance of SearchModification


createPeptide

public Peptide createPeptide()
Create an instance of Peptide


createIonType

public IonType createIonType()
Create an instance of IonType


createSpectraData

public SpectraData createSpectraData()
Create an instance of SpectraData


createFileFormat

public FileFormat createFileFormat()
Create an instance of FileFormat


createSearchDatabaseRef

public SearchDatabaseRef createSearchDatabaseRef()
Create an instance of SearchDatabaseRef


createTranslationTable

public TranslationTable createTranslationTable()
Create an instance of TranslationTable


createSourceFile

public SourceFile createSourceFile()
Create an instance of SourceFile


createCv

public Cv createCv()
Create an instance of Cv


createAffiliation

public Affiliation createAffiliation()
Create an instance of Affiliation


createAnalysisSoftwareList

public AnalysisSoftwareList createAnalysisSoftwareList()
Create an instance of AnalysisSoftwareList


createMeasure

public Measure createMeasure()
Create an instance of Measure


createEnzyme

public Enzyme createEnzyme()
Create an instance of Enzyme


createParentOrganization

public ParentOrganization createParentOrganization()
Create an instance of ParentOrganization


createFragmentation

public Fragmentation createFragmentation()
Create an instance of Fragmentation


createAuditCollection

public AuditCollection createAuditCollection()
Create an instance of AuditCollection


createFilter

public Filter createFilter()
Create an instance of Filter


createBibliographicReference

public BibliographicReference createBibliographicReference()
Create an instance of BibliographicReference


createMassTable

public MassTable createMassTable()
Create an instance of MassTable


createProvider

public Provider createProvider()
Create an instance of Provider


createAnalysisCollection

public AnalysisCollection createAnalysisCollection()
Create an instance of AnalysisCollection


createAnalysisProtocolCollection

public AnalysisProtocolCollection createAnalysisProtocolCollection()
Create an instance of AnalysisProtocolCollection


createInputSpectrumIdentifications

public InputSpectrumIdentifications createInputSpectrumIdentifications()
Create an instance of InputSpectrumIdentifications


createPeptideHypothesis

public PeptideHypothesis createPeptideHypothesis()
Create an instance of PeptideHypothesis


createDBSequence

public DBSequence createDBSequence()
Create an instance of DBSequence


createModificationParams

public ModificationParams createModificationParams()
Create an instance of ModificationParams


createSpectrumIdentificationList

public SpectrumIdentificationList createSpectrumIdentificationList()
Create an instance of SpectrumIdentificationList


createSubSample

public SubSample createSubSample()
Create an instance of SubSample


createAnalysisData

public AnalysisData createAnalysisData()
Create an instance of AnalysisData


createSpectrumIdentification

public SpectrumIdentification createSpectrumIdentification()
Create an instance of SpectrumIdentification


createRole

public Role createRole()
Create an instance of Role


createEnzymes

public Enzymes createEnzymes()
Create an instance of Enzymes


createSample

public Sample createSample()
Create an instance of Sample


createProteinAmbiguityGroup

public ProteinAmbiguityGroup createProteinAmbiguityGroup()
Create an instance of ProteinAmbiguityGroup


createCvList

public CvList createCvList()
Create an instance of CvList


createTolerance

public Tolerance createTolerance()
Create an instance of Tolerance


createPerson

public Person createPerson()
Create an instance of Person


createAmbiguousResidue

public AmbiguousResidue createAmbiguousResidue()
Create an instance of AmbiguousResidue


createSpectrumIdentificationItemRef

public SpectrumIdentificationItemRef createSpectrumIdentificationItemRef()
Create an instance of SpectrumIdentificationItemRef


createParamList

public ParamList createParamList()
Create an instance of ParamList


createSpectrumIdentificationItem

public SpectrumIdentificationItem createSpectrumIdentificationItem()
Create an instance of SpectrumIdentificationItem


createDatabaseTranslation

public DatabaseTranslation createDatabaseTranslation()
Create an instance of DatabaseTranslation


createSearchDatabase

public SearchDatabase createSearchDatabase()
Create an instance of SearchDatabase


createPeptideEvidence

public PeptideEvidence createPeptideEvidence()
Create an instance of PeptideEvidence


createSpecificityRules

public SpecificityRules createSpecificityRules()
Create an instance of SpecificityRules


createSpectrumIDFormat

public SpectrumIDFormat createSpectrumIDFormat()
Create an instance of SpectrumIDFormat


createUserParam

public UserParam createUserParam()
Create an instance of UserParam


createFragmentArray

public FragmentArray createFragmentArray()
Create an instance of FragmentArray


createMzIdentML

public MzIdentML createMzIdentML()
Create an instance of MzIdentML


createSpectrumIdentificationResult

public SpectrumIdentificationResult createSpectrumIdentificationResult()
Create an instance of SpectrumIdentificationResult


createResidue

public Residue createResidue()
Create an instance of Residue


createSubstitutionModification

public SubstitutionModification createSubstitutionModification()
Create an instance of SubstitutionModification


createDataCollection

public DataCollection createDataCollection()
Create an instance of DataCollection


createFragmentationTable

public FragmentationTable createFragmentationTable()
Create an instance of FragmentationTable


createMzIdentML

public javax.xml.bind.JAXBElement<MzIdentML> createMzIdentML(MzIdentML value)
Create an instance of JAXBElement<MzIdentML>}



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