Uses of Interface
uk.ac.ebi.jmzidml.xml.xxindex.MzIdentMLIndexer

Packages that use MzIdentMLIndexer
uk.ac.ebi.jmzidml.xml.io   
uk.ac.ebi.jmzidml.xml.jaxb.adapters   
uk.ac.ebi.jmzidml.xml.jaxb.resolver   
uk.ac.ebi.jmzidml.xml.jaxb.unmarshaller   
uk.ac.ebi.jmzidml.xml.jaxb.unmarshaller.listeners   
uk.ac.ebi.jmzidml.xml.xxindex   
 

Uses of MzIdentMLIndexer in uk.ac.ebi.jmzidml.xml.io
 

Constructors in uk.ac.ebi.jmzidml.xml.io with parameters of type MzIdentMLIndexer
MzIdentMLUnmarshaller(MzIdentMLIndexer indexer)
           
 

Uses of MzIdentMLIndexer in uk.ac.ebi.jmzidml.xml.jaxb.adapters
 

Fields in uk.ac.ebi.jmzidml.xml.jaxb.adapters declared as MzIdentMLIndexer
protected  MzIdentMLIndexer AbstractResolvingAdapter.index
           
 

Constructors in uk.ac.ebi.jmzidml.xml.jaxb.adapters with parameters of type MzIdentMLIndexer
AbstractResolvingAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
          the presence of a constructor forces all subclasses to provide a valid indexer for reference resolving.
AbstractResolvingAdapter(MzIdentMLIndexer index, AdapterObjectCache cache, boolean aUseSpectrumCache)
           
AnalysisSoftwareAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
CvAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
DBSequenceAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
MassTableAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
MeasureAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
OrganizationAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
PeptideAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
PeptideEvidenceAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
ProteinDetectionListAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
ProteinDetectionProtocolAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
SampleAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
SearchDatabaseAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
SpectraDataAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
SpectrumIdentificationListAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
SpectrumIdentificationProtocolAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
TranslationTableAdapter(MzIdentMLIndexer index, AdapterObjectCache cache)
           
 

Uses of MzIdentMLIndexer in uk.ac.ebi.jmzidml.xml.jaxb.resolver
 

Constructors in uk.ac.ebi.jmzidml.xml.jaxb.resolver with parameters of type MzIdentMLIndexer
AbstractParamUnitCvRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
AbstractReferenceResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
AffiliationRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
ContactRoleRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
CvParamRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
DBSequenceRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
FragmentArrayRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
InputSpectraRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
InputSpectrumIdentificationsRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
ParentOrganizationRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
PeptideEvidenceRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
PeptideEvidenceResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
PeptideHypothesisRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
ProteinDetectionHypothesisRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
ProteinDetectionProtocolRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
ProteinDetectionRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
ProviderRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
SearchDatabaseRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
SpectrumIdentificationItemRefRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
SpectrumIdentificationItemRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
SpectrumIdentificationProtocolRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
SpectrumIdentificationRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
SpectrumIdentificationResultRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
SubSampleRefResolver(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
 

Uses of MzIdentMLIndexer in uk.ac.ebi.jmzidml.xml.jaxb.unmarshaller
 

Methods in uk.ac.ebi.jmzidml.xml.jaxb.unmarshaller with parameters of type MzIdentMLIndexer
 javax.xml.bind.Unmarshaller UnmarshallerFactory.initializeUnmarshaller(MzIdentMLIndexer index, MzIdentMLObjectCache cache, MzIdentMLNamespaceFilter xmlFilter)
           
 

Uses of MzIdentMLIndexer in uk.ac.ebi.jmzidml.xml.jaxb.unmarshaller.listeners
 

Constructors in uk.ac.ebi.jmzidml.xml.jaxb.unmarshaller.listeners with parameters of type MzIdentMLIndexer
RawXMLListener(MzIdentMLIndexer index, MzIdentMLObjectCache cache)
           
 

Uses of MzIdentMLIndexer in uk.ac.ebi.jmzidml.xml.xxindex
 

Methods in uk.ac.ebi.jmzidml.xml.xxindex that return MzIdentMLIndexer
 MzIdentMLIndexer MzIdentMLIndexerFactory.buildIndex(File xmlFile)
           
 MzIdentMLIndexer MzIdentMLIndexerFactory.buildIndex(File xmlFile, Set<String> xpaths)
           
 



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