Serialized Form


Package uk.ac.ebi.jmzidml.model

Class uk.ac.ebi.jmzidml.model.AbstractIdentifiableParamGroup extends Identifiable implements Serializable

Serialized Fields

cvParams

List<E> cvParams

userParams

List<E> userParams

Package uk.ac.ebi.jmzidml.model.mzidml

Class uk.ac.ebi.jmzidml.model.mzidml.AbstractContact extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

paramGroup

List<E> paramGroup

Class uk.ac.ebi.jmzidml.model.mzidml.AbstractParam extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

name

String name

value

String value

unitAccession

String unitAccession

unitName

String unitName

unitCvRef

String unitCvRef

unitCv

Cv unitCv

Class uk.ac.ebi.jmzidml.model.mzidml.Affiliation extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

organizationRef

String organizationRef

organization

Organization organization

Class uk.ac.ebi.jmzidml.model.mzidml.AmbiguousResidue extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

paramGroup

List<E> paramGroup

code

String code

Class uk.ac.ebi.jmzidml.model.mzidml.AnalysisCollection extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

spectrumIdentification

List<E> spectrumIdentification

proteinDetection

ProteinDetection proteinDetection

Class uk.ac.ebi.jmzidml.model.mzidml.AnalysisData extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

spectrumIdentificationList

List<E> spectrumIdentificationList

proteinDetectionList

ProteinDetectionList proteinDetectionList

Class uk.ac.ebi.jmzidml.model.mzidml.AnalysisProtocolCollection extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

spectrumIdentificationProtocol

List<E> spectrumIdentificationProtocol

proteinDetectionProtocol

ProteinDetectionProtocol proteinDetectionProtocol

Class uk.ac.ebi.jmzidml.model.mzidml.AnalysisSampleCollection extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

sample

List<E> sample

Class uk.ac.ebi.jmzidml.model.mzidml.AnalysisSoftware extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

contactRole

ContactRole contactRole

softwareName

Param softwareName

customizations

String customizations

version

String version

uri

String uri

Class uk.ac.ebi.jmzidml.model.mzidml.AnalysisSoftwareList extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

analysisSoftware

List<E> analysisSoftware

Class uk.ac.ebi.jmzidml.model.mzidml.AuditCollection extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

personOrOrganization

List<E> personOrOrganization

Class uk.ac.ebi.jmzidml.model.mzidml.BibliographicReference extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

authors

String authors

publication

String publication

publisher

String publisher

editor

String editor

year

Integer year

volume

String volume

issue

String issue

pages

String pages

title

String title

doi

String doi

Class uk.ac.ebi.jmzidml.model.mzidml.ContactRole extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

role

Role role

contactRef

String contactRef

contact

AbstractContact contact

Class uk.ac.ebi.jmzidml.model.mzidml.Cv extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

fullName

String fullName

version

String version

uri

String uri

id

String id

Class uk.ac.ebi.jmzidml.model.mzidml.CvList extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

cv

List<E> cv

Class uk.ac.ebi.jmzidml.model.mzidml.CvParam extends AbstractParam implements Serializable

serialVersionUID: 100L

Serialized Fields

cvRef

String cvRef

accession

String accession

cv

Cv cv

Class uk.ac.ebi.jmzidml.model.mzidml.DatabaseFilters extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

filter

List<E> filter

Class uk.ac.ebi.jmzidml.model.mzidml.DatabaseTranslation extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

translationTable

List<E> translationTable

frames

List<E> frames

Class uk.ac.ebi.jmzidml.model.mzidml.DataCollection extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

inputs

Inputs inputs

analysisData

AnalysisData analysisData

Class uk.ac.ebi.jmzidml.model.mzidml.DBSequence extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

seq

String seq

paramGroup

List<E> paramGroup

length

Integer length

searchDatabaseRef

String searchDatabaseRef

accession

String accession

searchDatabase

SearchDatabase searchDatabase

Class uk.ac.ebi.jmzidml.model.mzidml.Enzyme extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

siteRegexp

String siteRegexp

enzymeName

ParamList enzymeName

nTermGain

String nTermGain

cTermGain

String cTermGain

semiSpecific

Boolean semiSpecific

missedCleavages

Integer missedCleavages

minDistance

Integer minDistance

Class uk.ac.ebi.jmzidml.model.mzidml.Enzymes extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

enzyme

List<E> enzyme

independent

Boolean independent

Class uk.ac.ebi.jmzidml.model.mzidml.ExternalData extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

externalFormatDocumentation

String externalFormatDocumentation

fileFormat

FileFormat fileFormat

location

String location

Class uk.ac.ebi.jmzidml.model.mzidml.FileFormat extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

cvParam

CvParam cvParam

Class uk.ac.ebi.jmzidml.model.mzidml.Filter extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

filterType

Param filterType

include

ParamList include

exclude

ParamList exclude

Class uk.ac.ebi.jmzidml.model.mzidml.FragmentArray extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

values

List<E> values

measureRef

String measureRef

measure

Measure measure

Class uk.ac.ebi.jmzidml.model.mzidml.Fragmentation extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

ionType

List<E> ionType

Class uk.ac.ebi.jmzidml.model.mzidml.FragmentationTable extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

measure

List<E> measure

Class uk.ac.ebi.jmzidml.model.mzidml.Identifiable extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

id

String id

name

String name

Class uk.ac.ebi.jmzidml.model.mzidml.Inputs extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

sourceFile

List<E> sourceFile

searchDatabase

List<E> searchDatabase

spectraData

List<E> spectraData

Class uk.ac.ebi.jmzidml.model.mzidml.InputSpectra extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

spectraDataRef

String spectraDataRef

spectraData

SpectraData spectraData

Class uk.ac.ebi.jmzidml.model.mzidml.InputSpectrumIdentifications extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

spectrumIdentificationListRef

String spectrumIdentificationListRef

spectrumIdentificationList

SpectrumIdentificationList spectrumIdentificationList

Class uk.ac.ebi.jmzidml.model.mzidml.IonType extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

fragmentArray

List<E> fragmentArray

cvParam

CvParam cvParam

index

List<E> index

charge

int charge

Class uk.ac.ebi.jmzidml.model.mzidml.MassTable extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

residue

List<E> residue

ambiguousResidue

List<E> ambiguousResidue

paramGroup

List<E> paramGroup

msLevel

List<E> msLevel

Class uk.ac.ebi.jmzidml.model.mzidml.Measure extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

cvParam

List<E> cvParam

Class uk.ac.ebi.jmzidml.model.mzidml.Modification extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

cvParam

List<E> cvParam

location

Integer location

residues

List<E> residues

avgMassDelta

Double avgMassDelta

monoisotopicMassDelta

Double monoisotopicMassDelta

Class uk.ac.ebi.jmzidml.model.mzidml.ModificationParams extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

searchModification

List<E> searchModification

Class uk.ac.ebi.jmzidml.model.mzidml.ModParam extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

cvParam

CvParam cvParam

massDelta

float massDelta

residues

List<E> residues

Class uk.ac.ebi.jmzidml.model.mzidml.MzIdentML extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

cvList

CvList cvList

analysisSoftwareList

AnalysisSoftwareList analysisSoftwareList

provider

Provider provider

auditCollection

AuditCollection auditCollection

analysisSampleCollection

AnalysisSampleCollection analysisSampleCollection

sequenceCollection

SequenceCollection sequenceCollection

analysisCollection

AnalysisCollection analysisCollection

analysisProtocolCollection

AnalysisProtocolCollection analysisProtocolCollection

dataCollection

DataCollection dataCollection

bibliographicReference

List<E> bibliographicReference

creationDate

Calendar creationDate

version

String version

Class uk.ac.ebi.jmzidml.model.mzidml.Organization extends AbstractContact implements Serializable

serialVersionUID: 100L

Serialized Fields

parent

ParentOrganization parent

Class uk.ac.ebi.jmzidml.model.mzidml.Param extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

paramGroup

AbstractParam paramGroup

Class uk.ac.ebi.jmzidml.model.mzidml.ParamList extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

paramGroup

List<E> paramGroup

Class uk.ac.ebi.jmzidml.model.mzidml.ParentOrganization extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

organizationRef

String organizationRef

organization

Organization organization

Class uk.ac.ebi.jmzidml.model.mzidml.Peptide extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

peptideSequence

String peptideSequence

modification

List<E> modification

substitutionModification

List<E> substitutionModification

paramGroup

List<E> paramGroup

Class uk.ac.ebi.jmzidml.model.mzidml.PeptideEvidence extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

paramGroup

List<E> paramGroup

dbSequenceRef

String dbSequenceRef

peptideRef

String peptideRef

start

Integer start

end

Integer end

pre

String pre

post

String post

translationTableRef

String translationTableRef

frame

Integer frame

isDecoy

Boolean isDecoy

dbSequence

DBSequence dbSequence

peptide

Peptide peptide

translationTable

TranslationTable translationTable

Class uk.ac.ebi.jmzidml.model.mzidml.PeptideEvidenceRef extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

peptideEvidenceRef

String peptideEvidenceRef

peptideEvidence

PeptideEvidence peptideEvidence

Class uk.ac.ebi.jmzidml.model.mzidml.PeptideHypothesis extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

spectrumIdentificationItemRef

List<E> spectrumIdentificationItemRef

peptideEvidenceRef

String peptideEvidenceRef

peptideEvidence

PeptideEvidence peptideEvidence

Class uk.ac.ebi.jmzidml.model.mzidml.Person extends AbstractContact implements Serializable

serialVersionUID: 100L

Serialized Fields

affiliation

List<E> affiliation

lastName

String lastName

firstName

String firstName

midInitials

String midInitials

Class uk.ac.ebi.jmzidml.model.mzidml.ProteinAmbiguityGroup extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

proteinDetectionHypothesis

List<E> proteinDetectionHypothesis

paramGroup

List<E> paramGroup

Class uk.ac.ebi.jmzidml.model.mzidml.ProteinDetection extends ProtocolApplication implements Serializable

serialVersionUID: 100L

Serialized Fields

inputSpectrumIdentifications

List<E> inputSpectrumIdentifications

proteinDetectionListRef

String proteinDetectionListRef

proteinDetectionProtocolRef

String proteinDetectionProtocolRef

proteinDetectionList

ProteinDetectionList proteinDetectionList

proteinDetectionProtocol

ProteinDetectionProtocol proteinDetectionProtocol

Class uk.ac.ebi.jmzidml.model.mzidml.ProteinDetectionHypothesis extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

peptideHypothesis

List<E> peptideHypothesis

paramGroup

List<E> paramGroup

dbSequenceRef

String dbSequenceRef

passThreshold

boolean passThreshold

dbSequence

DBSequence dbSequence

Class uk.ac.ebi.jmzidml.model.mzidml.ProteinDetectionList extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

proteinAmbiguityGroup

List<E> proteinAmbiguityGroup

paramGroup

List<E> paramGroup

Class uk.ac.ebi.jmzidml.model.mzidml.ProteinDetectionProtocol extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

analysisParams

ParamList analysisParams

threshold

ParamList threshold

analysisSoftwareRef

String analysisSoftwareRef

analysisSoftware

AnalysisSoftware analysisSoftware

Class uk.ac.ebi.jmzidml.model.mzidml.ProtocolApplication extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

activityDate

Calendar activityDate

Class uk.ac.ebi.jmzidml.model.mzidml.Provider extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

contactRole

ContactRole contactRole

softwareRef

String softwareRef

software

AnalysisSoftware software

Class uk.ac.ebi.jmzidml.model.mzidml.Residue extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

code

String code

mass

float mass

Class uk.ac.ebi.jmzidml.model.mzidml.Role extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

cvParam

CvParam cvParam

Class uk.ac.ebi.jmzidml.model.mzidml.Sample extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

contactRole

List<E> contactRole

subSample

List<E> subSample

paramGroup

List<E> paramGroup

Class uk.ac.ebi.jmzidml.model.mzidml.SearchDatabase extends ExternalData implements Serializable

serialVersionUID: 100L

Serialized Fields

databaseName

Param databaseName

cvParam

List<E> cvParam

version

String version

releaseDate

Calendar releaseDate

numDatabaseSequences

Long numDatabaseSequences

numResidues

Long numResidues

Class uk.ac.ebi.jmzidml.model.mzidml.SearchDatabaseRef extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

searchDatabaseRef

String searchDatabaseRef

searchDatabase

SearchDatabase searchDatabase

Class uk.ac.ebi.jmzidml.model.mzidml.SearchModification extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

specificityRules

List<E> specificityRules

cvParam

List<E> cvParam

fixedMod

boolean fixedMod

massDelta

float massDelta

residues

List<E> residues

Class uk.ac.ebi.jmzidml.model.mzidml.SequenceCollection extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

dbSequence

List<E> dbSequence

peptide

List<E> peptide

peptideEvidence

List<E> peptideEvidence

Class uk.ac.ebi.jmzidml.model.mzidml.SourceFile extends ExternalData implements Serializable

serialVersionUID: 100L

Serialized Fields

paramGroup

List<E> paramGroup

Class uk.ac.ebi.jmzidml.model.mzidml.SpecificityRules extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

cvParam

List<E> cvParam

Class uk.ac.ebi.jmzidml.model.mzidml.SpectraData extends ExternalData implements Serializable

serialVersionUID: 100L

Serialized Fields

spectrumIDFormat

SpectrumIDFormat spectrumIDFormat

Class uk.ac.ebi.jmzidml.model.mzidml.SpectrumIdentification extends ProtocolApplication implements Serializable

serialVersionUID: 100L

Serialized Fields

inputSpectra

List<E> inputSpectra

searchDatabaseRef

List<E> searchDatabaseRef

spectrumIdentificationProtocolRef

String spectrumIdentificationProtocolRef

spectrumIdentificationListRef

String spectrumIdentificationListRef

spectrumIdentificationList

SpectrumIdentificationList spectrumIdentificationList

spectrumIdentificationProtocol

SpectrumIdentificationProtocol spectrumIdentificationProtocol

Class uk.ac.ebi.jmzidml.model.mzidml.SpectrumIdentificationItem extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

peptideEvidenceRef

List<E> peptideEvidenceRef

fragmentation

Fragmentation fragmentation

paramGroup

List<E> paramGroup

chargeState

int chargeState

experimentalMassToCharge

double experimentalMassToCharge

calculatedMassToCharge

Double calculatedMassToCharge

calculatedPI

Float calculatedPI

peptideRef

String peptideRef

rank

int rank

passThreshold

boolean passThreshold

massTableRef

String massTableRef

sampleRef

String sampleRef

peptide

Peptide peptide

massTable

MassTable massTable

sample

Sample sample

Class uk.ac.ebi.jmzidml.model.mzidml.SpectrumIdentificationItemRef extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

spectrumIdentificationItemRef

String spectrumIdentificationItemRef

spectrumIdentificationItem

SpectrumIdentificationItem spectrumIdentificationItem

Class uk.ac.ebi.jmzidml.model.mzidml.SpectrumIdentificationList extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

fragmentationTable

FragmentationTable fragmentationTable

spectrumIdentificationResult

List<E> spectrumIdentificationResult

paramGroup

List<E> paramGroup

numSequencesSearched

Long numSequencesSearched

Class uk.ac.ebi.jmzidml.model.mzidml.SpectrumIdentificationProtocol extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

searchType

Param searchType

additionalSearchParams

ParamList additionalSearchParams

modificationParams

ModificationParams modificationParams

enzymes

Enzymes enzymes

massTable

List<E> massTable

fragmentTolerance

Tolerance fragmentTolerance

parentTolerance

Tolerance parentTolerance

threshold

ParamList threshold

databaseFilters

DatabaseFilters databaseFilters

databaseTranslation

DatabaseTranslation databaseTranslation

analysisSoftwareRef

String analysisSoftwareRef

analysisSoftware

AnalysisSoftware analysisSoftware

Class uk.ac.ebi.jmzidml.model.mzidml.SpectrumIdentificationResult extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

spectrumIdentificationItem

List<E> spectrumIdentificationItem

paramGroup

List<E> paramGroup

spectrumID

String spectrumID

spectraDataRef

String spectraDataRef

spectraData

SpectraData spectraData

Class uk.ac.ebi.jmzidml.model.mzidml.SpectrumIDFormat extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

cvParam

CvParam cvParam

Class uk.ac.ebi.jmzidml.model.mzidml.SubSample extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

sampleRef

String sampleRef

sample

Sample sample

Class uk.ac.ebi.jmzidml.model.mzidml.SubstitutionModification extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

originalResidue

String originalResidue

replacementResidue

String replacementResidue

location

Integer location

avgMassDelta

Double avgMassDelta

monoisotopicMassDelta

Double monoisotopicMassDelta

Class uk.ac.ebi.jmzidml.model.mzidml.Tolerance extends MzIdentMLObject implements Serializable

serialVersionUID: 100L

Serialized Fields

cvParam

List<E> cvParam

Class uk.ac.ebi.jmzidml.model.mzidml.TranslationTable extends Identifiable implements Serializable

serialVersionUID: 100L

Serialized Fields

cvParam

List<E> cvParam

Class uk.ac.ebi.jmzidml.model.mzidml.UserParam extends AbstractParam implements Serializable

serialVersionUID: 100L

Serialized Fields

type

String type

Package uk.ac.ebi.jmzidml.model.mzidml.params

Class uk.ac.ebi.jmzidml.model.mzidml.params.AdditionalParamsCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.AdditionalParamsUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.AdditionalSearchParamsCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.AdditionalSearchParamsUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.AmbiguousResidueCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.AmbiguousResidueUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.AnalysisParamsCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.AnalysisParamsUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.DatabaseNameCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.DatabaseNameUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.DBSequenceCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.DBSequenceUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.EnzymeNameCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.EnzymeNameUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ExcludeCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ExcludeUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.FileFormatCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.FilterTypeCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.FilterTypeUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.IncludeCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.IncludeUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.IonTypeCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.MassTableCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.MassTableUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.MeasureCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ModificationCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ModificationUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ModParamCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.OrganizationCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.OrganizationUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.PeptideCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.PeptideEvidenceCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.PeptideEvidenceListCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.PeptideEvidenceListUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.PeptideEvidenceUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.PeptideUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.PersonCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.PersonUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ProteinAmbiguityGroupCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ProteinAmbiguityGroupUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ProteinDetectionHypothesisCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ProteinDetectionHypothesisUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ProteinDetectionListCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ProteinDetectionListUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.RoleCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SampleCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SampleUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SearchDatabaseCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SearchTypeCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SearchTypeUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SoftwareNameCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SoftwareNameUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SourceFileCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SourceFileUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SpecificityRulesCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SpectrumIdentificationItemCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SpectrumIdentificationItemUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SpectrumIdentificationListCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SpectrumIdentificationListUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SpectrumIdentificationResultCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SpectrumIdentificationResultUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.SpectrumIDFormatCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ThresholdCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ThresholdUserParam extends UserParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.ToleranceCvParam extends CvParam implements Serializable

Class uk.ac.ebi.jmzidml.model.mzidml.params.TranslationTableCvParam extends CvParam implements Serializable



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