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java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.Identifiable
uk.ac.ebi.jmzidml.model.mzidml.ProteinDetectionHypothesis
public class ProteinDetectionHypothesis
A single result of the ProteinDetection analysis (i.e. a protein).
Java class for ProteinDetectionHypothesisType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="ProteinDetectionHypothesisType"> <complexContent> <extension base="{http://psidev.info/psi/pi/mzIdentML/1.1}IdentifiableType"> <sequence> <element name="PeptideHypothesis" type="{http://psidev.info/psi/pi/mzIdentML/1.1}PeptideHypothesisType" maxOccurs="unbounded"/> <group ref="{http://psidev.info/psi/pi/mzIdentML/1.1}ParamGroup" maxOccurs="unbounded" minOccurs="0"/> </sequence> <attribute name="dBSequence_ref" type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute name="passThreshold" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" /> </extension> </complexContent> </complexType>
Field Summary | |
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protected DBSequence |
dbSequence
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protected String |
dbSequenceRef
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protected List<AbstractParam> |
paramGroup
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protected boolean |
passThreshold
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protected List<PeptideHypothesis> |
peptideHypothesis
|
Fields inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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id, name |
Constructor Summary | |
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ProteinDetectionHypothesis()
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Method Summary | |
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List<CvParam> |
getCvParam()
|
DBSequence |
getDBSequence()
|
String |
getDBSequenceRef()
Gets the value of the dbSequenceRef property. |
List<AbstractParam> |
getParamGroup()
Scores or parameters associated with this ProteinDetectionHypothesis e.g. |
List<PeptideHypothesis> |
getPeptideHypothesis()
Gets the value of the peptideHypothesis property. |
List<UserParam> |
getUserParam()
|
boolean |
isPassThreshold()
Gets the value of the passThreshold property. |
void |
setDBSequence(DBSequence dbSequence)
|
void |
setPassThreshold(boolean value)
Sets the value of the passThreshold property. |
Methods inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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getId, getName, setId, setName |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
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getHid |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected List<PeptideHypothesis> peptideHypothesis
protected List<AbstractParam> paramGroup
protected String dbSequenceRef
protected boolean passThreshold
protected DBSequence dbSequence
Constructor Detail |
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public ProteinDetectionHypothesis()
Method Detail |
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public List<PeptideHypothesis> getPeptideHypothesis()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the peptideHypothesis property.
For example, to add a new item, do as follows:
getPeptideHypothesis().add(newItem);
Objects of the following type(s) are allowed in the list
PeptideHypothesis
public List<AbstractParam> getParamGroup()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the paramGroup property.
For example, to add a new item, do as follows:
getParamGroup().add(newItem);
Objects of the following type(s) are allowed in the list
CvParam
UserParam
public String getDBSequenceRef()
String
public boolean isPassThreshold()
public void setPassThreshold(boolean value)
public DBSequence getDBSequence()
public void setDBSequence(DBSequence dbSequence)
public List<CvParam> getCvParam()
getCvParam
in interface CvParamListCapable
getCvParam
in interface ParamGroupCapable
public List<UserParam> getUserParam()
getUserParam
in interface ParamGroupCapable
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