uk.ac.ebi.jmzidml.model.mzidml
Class SubstitutionModification

java.lang.Object
  extended by uk.ac.ebi.jmzidml.model.MzIdentMLObject
      extended by uk.ac.ebi.jmzidml.model.mzidml.SubstitutionModification
All Implemented Interfaces:
Serializable

public class SubstitutionModification
extends MzIdentMLObject
implements Serializable

A modification where one residue is substituted by another (amino acid change).

Java class for SubstitutionModificationType complex type.

The following schema fragment specifies the expected content contained within this class.

 <complexType name="SubstitutionModificationType">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <attribute name="originalResidue" use="required">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
             <pattern value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?\-]{1}"/>
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="replacementResidue" use="required">
         <simpleType>
           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
             <pattern value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?\-]{1}"/>
           </restriction>
         </simpleType>
       </attribute>
       <attribute name="location" type="{http://www.w3.org/2001/XMLSchema}int" />
       <attribute name="avgMassDelta" type="{http://www.w3.org/2001/XMLSchema}double" />
       <attribute name="monoisotopicMassDelta" type="{http://www.w3.org/2001/XMLSchema}double" />
     </restriction>
   </complexContent>
 </complexType>
 

See Also:
Serialized Form

Field Summary
protected  Double avgMassDelta
           
protected  Integer location
           
protected  Double monoisotopicMassDelta
           
protected  String originalResidue
           
protected  String replacementResidue
           
 
Constructor Summary
SubstitutionModification()
           
 
Method Summary
 Double getAvgMassDelta()
          Gets the value of the avgMassDelta property.
 Integer getLocation()
          Gets the value of the location property.
 Double getMonoisotopicMassDelta()
          Gets the value of the monoisotopicMassDelta property.
 String getOriginalResidue()
          Gets the value of the originalResidue property.
 String getReplacementResidue()
          Gets the value of the replacementResidue property.
 void setAvgMassDelta(Double value)
          Sets the value of the avgMassDelta property.
 void setLocation(Integer value)
          Sets the value of the location property.
 void setMonoisotopicMassDelta(Double value)
          Sets the value of the monoisotopicMassDelta property.
 void setOriginalResidue(String value)
          Sets the value of the originalResidue property.
 void setReplacementResidue(String value)
          Sets the value of the replacementResidue property.
 
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject
getHid
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

originalResidue

protected String originalResidue

replacementResidue

protected String replacementResidue

location

protected Integer location

avgMassDelta

protected Double avgMassDelta

monoisotopicMassDelta

protected Double monoisotopicMassDelta
Constructor Detail

SubstitutionModification

public SubstitutionModification()
Method Detail

getOriginalResidue

public String getOriginalResidue()
Gets the value of the originalResidue property.

Returns:
possible object is String

setOriginalResidue

public void setOriginalResidue(String value)
Sets the value of the originalResidue property.

Parameters:
value - allowed object is String

getReplacementResidue

public String getReplacementResidue()
Gets the value of the replacementResidue property.

Returns:
possible object is String

setReplacementResidue

public void setReplacementResidue(String value)
Sets the value of the replacementResidue property.

Parameters:
value - allowed object is String

getLocation

public Integer getLocation()
Gets the value of the location property.

Returns:
possible object is Integer

setLocation

public void setLocation(Integer value)
Sets the value of the location property.

Parameters:
value - allowed object is Integer

getAvgMassDelta

public Double getAvgMassDelta()
Gets the value of the avgMassDelta property.

Returns:
possible object is Double

setAvgMassDelta

public void setAvgMassDelta(Double value)
Sets the value of the avgMassDelta property.

Parameters:
value - allowed object is Double

getMonoisotopicMassDelta

public Double getMonoisotopicMassDelta()
Gets the value of the monoisotopicMassDelta property.

Returns:
possible object is Double

setMonoisotopicMassDelta

public void setMonoisotopicMassDelta(Double value)
Sets the value of the monoisotopicMassDelta property.

Parameters:
value - allowed object is Double


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