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java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.SubstitutionModification
public class SubstitutionModification
A modification where one residue is substituted by another (amino acid change).
Java class for SubstitutionModificationType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="SubstitutionModificationType"> <complexContent> <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> <attribute name="originalResidue" use="required"> <simpleType> <restriction base="{http://www.w3.org/2001/XMLSchema}string"> <pattern value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?\-]{1}"/> </restriction> </simpleType> </attribute> <attribute name="replacementResidue" use="required"> <simpleType> <restriction base="{http://www.w3.org/2001/XMLSchema}string"> <pattern value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?\-]{1}"/> </restriction> </simpleType> </attribute> <attribute name="location" type="{http://www.w3.org/2001/XMLSchema}int" /> <attribute name="avgMassDelta" type="{http://www.w3.org/2001/XMLSchema}double" /> <attribute name="monoisotopicMassDelta" type="{http://www.w3.org/2001/XMLSchema}double" /> </restriction> </complexContent> </complexType>
Field Summary | |
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protected Double |
avgMassDelta
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protected Integer |
location
|
protected Double |
monoisotopicMassDelta
|
protected String |
originalResidue
|
protected String |
replacementResidue
|
Constructor Summary | |
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SubstitutionModification()
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Method Summary | |
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Double |
getAvgMassDelta()
Gets the value of the avgMassDelta property. |
Integer |
getLocation()
Gets the value of the location property. |
Double |
getMonoisotopicMassDelta()
Gets the value of the monoisotopicMassDelta property. |
String |
getOriginalResidue()
Gets the value of the originalResidue property. |
String |
getReplacementResidue()
Gets the value of the replacementResidue property. |
void |
setAvgMassDelta(Double value)
Sets the value of the avgMassDelta property. |
void |
setLocation(Integer value)
Sets the value of the location property. |
void |
setMonoisotopicMassDelta(Double value)
Sets the value of the monoisotopicMassDelta property. |
void |
setOriginalResidue(String value)
Sets the value of the originalResidue property. |
void |
setReplacementResidue(String value)
Sets the value of the replacementResidue property. |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
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getHid |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected String originalResidue
protected String replacementResidue
protected Integer location
protected Double avgMassDelta
protected Double monoisotopicMassDelta
Constructor Detail |
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public SubstitutionModification()
Method Detail |
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public String getOriginalResidue()
String
public void setOriginalResidue(String value)
value
- allowed object is
String
public String getReplacementResidue()
String
public void setReplacementResidue(String value)
value
- allowed object is
String
public Integer getLocation()
Integer
public void setLocation(Integer value)
value
- allowed object is
Integer
public Double getAvgMassDelta()
Double
public void setAvgMassDelta(Double value)
value
- allowed object is
Double
public Double getMonoisotopicMassDelta()
Double
public void setMonoisotopicMassDelta(Double value)
value
- allowed object is
Double
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