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java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.Identifiable
uk.ac.ebi.jmzidml.model.mzidml.MzIdentML
public class MzIdentML
The upper-most hierarchy level of mzIdentML with sub-containers for example describing software, protocols and search results (spectrum identifications or protein detection results).
Java class for MzIdentMLType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="MzIdentMLType"> <complexContent> <extension base="{http://psidev.info/psi/pi/mzIdentML/1.1}IdentifiableType"> <sequence> <element name="cvList" type="{http://psidev.info/psi/pi/mzIdentML/1.1}CVListType"/> <element name="AnalysisSoftwareList" type="{http://psidev.info/psi/pi/mzIdentML/1.1}AnalysisSoftwareListType" minOccurs="0"/> <element name="Provider" type="{http://psidev.info/psi/pi/mzIdentML/1.1}ProviderType" minOccurs="0"/> <element name="AuditCollection" type="{http://psidev.info/psi/pi/mzIdentML/1.1}AuditCollectionType" minOccurs="0"/> <element name="AnalysisSampleCollection" type="{http://psidev.info/psi/pi/mzIdentML/1.1}AnalysisSampleCollectionType" minOccurs="0"/> <element name="SequenceCollection" type="{http://psidev.info/psi/pi/mzIdentML/1.1}SequenceCollectionType" minOccurs="0"/> <element name="AnalysisCollection" type="{http://psidev.info/psi/pi/mzIdentML/1.1}AnalysisCollectionType"/> <element name="AnalysisProtocolCollection" type="{http://psidev.info/psi/pi/mzIdentML/1.1}AnalysisProtocolCollectionType"/> <element name="DataCollection" type="{http://psidev.info/psi/pi/mzIdentML/1.1}DataCollectionType"/> <element name="BibliographicReference" type="{http://psidev.info/psi/pi/mzIdentML/1.1}BibliographicReferenceType" maxOccurs="unbounded" minOccurs="0"/> </sequence> <attribute name="creationDate" type="{http://www.w3.org/2001/XMLSchema}dateTime" /> <attribute name="version" use="required" type="{http://psidev.info/psi/pi/mzIdentML/1.1}versionRegex" /> </extension> </complexContent> </complexType>
Field Summary | |
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protected AnalysisCollection |
analysisCollection
|
protected AnalysisProtocolCollection |
analysisProtocolCollection
|
protected AnalysisSampleCollection |
analysisSampleCollection
|
protected AnalysisSoftwareList |
analysisSoftwareList
|
protected AuditCollection |
auditCollection
|
protected List<BibliographicReference> |
bibliographicReference
|
protected Calendar |
creationDate
|
protected CvList |
cvList
|
protected DataCollection |
dataCollection
|
protected Provider |
provider
|
protected SequenceCollection |
sequenceCollection
|
protected String |
version
|
Fields inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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id, name |
Constructor Summary | |
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MzIdentML()
|
Method Summary | |
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AnalysisCollection |
getAnalysisCollection()
Gets the value of the analysisCollection property. |
AnalysisProtocolCollection |
getAnalysisProtocolCollection()
Gets the value of the analysisProtocolCollection property. |
AnalysisSampleCollection |
getAnalysisSampleCollection()
Gets the value of the analysisSampleCollection property. |
AnalysisSoftwareList |
getAnalysisSoftwareList()
Gets the value of the analysisSoftwareList property. |
AuditCollection |
getAuditCollection()
Gets the value of the auditCollection property. |
List<BibliographicReference> |
getBibliographicReference()
Gets the value of the bibliographicReference property. |
Calendar |
getCreationDate()
Gets the value of the creationDate property. |
CvList |
getCvList()
Gets the value of the cvList property. |
DataCollection |
getDataCollection()
Gets the value of the dataCollection property. |
Provider |
getProvider()
Gets the value of the provider property. |
SequenceCollection |
getSequenceCollection()
Gets the value of the sequenceCollection property. |
String |
getVersion()
Gets the value of the version property. |
void |
setAnalysisCollection(AnalysisCollection value)
Sets the value of the analysisCollection property. |
void |
setAnalysisProtocolCollection(AnalysisProtocolCollection value)
Sets the value of the analysisProtocolCollection property. |
void |
setAnalysisSampleCollection(AnalysisSampleCollection value)
Sets the value of the analysisSampleCollection property. |
void |
setAnalysisSoftwareList(AnalysisSoftwareList value)
Sets the value of the analysisSoftwareList property. |
void |
setAuditCollection(AuditCollection value)
Sets the value of the auditCollection property. |
void |
setCreationDate(Calendar value)
Sets the value of the creationDate property. |
void |
setCvList(CvList value)
Sets the value of the cvList property. |
void |
setDataCollection(DataCollection value)
Sets the value of the dataCollection property. |
void |
setProvider(Provider value)
Sets the value of the provider property. |
void |
setSequenceCollection(SequenceCollection value)
Sets the value of the sequenceCollection property. |
void |
setVersion(String value)
Sets the value of the version property. |
Methods inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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getId, getName, setId, setName |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
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getHid |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected CvList cvList
protected AnalysisSoftwareList analysisSoftwareList
protected Provider provider
protected AuditCollection auditCollection
protected AnalysisSampleCollection analysisSampleCollection
protected SequenceCollection sequenceCollection
protected AnalysisCollection analysisCollection
protected AnalysisProtocolCollection analysisProtocolCollection
protected DataCollection dataCollection
protected List<BibliographicReference> bibliographicReference
protected Calendar creationDate
protected String version
Constructor Detail |
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public MzIdentML()
Method Detail |
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public CvList getCvList()
CvList
public void setCvList(CvList value)
value
- allowed object is
CvList
public AnalysisSoftwareList getAnalysisSoftwareList()
AnalysisSoftwareList
public void setAnalysisSoftwareList(AnalysisSoftwareList value)
value
- allowed object is
AnalysisSoftwareList
public Provider getProvider()
Provider
public void setProvider(Provider value)
value
- allowed object is
Provider
public AuditCollection getAuditCollection()
AuditCollection
public void setAuditCollection(AuditCollection value)
value
- allowed object is
AuditCollection
public AnalysisSampleCollection getAnalysisSampleCollection()
AnalysisSampleCollection
public void setAnalysisSampleCollection(AnalysisSampleCollection value)
value
- allowed object is
AnalysisSampleCollection
public SequenceCollection getSequenceCollection()
SequenceCollection
public void setSequenceCollection(SequenceCollection value)
value
- allowed object is
SequenceCollection
public AnalysisCollection getAnalysisCollection()
AnalysisCollection
public void setAnalysisCollection(AnalysisCollection value)
value
- allowed object is
AnalysisCollection
public AnalysisProtocolCollection getAnalysisProtocolCollection()
AnalysisProtocolCollection
public void setAnalysisProtocolCollection(AnalysisProtocolCollection value)
value
- allowed object is
AnalysisProtocolCollection
public DataCollection getDataCollection()
DataCollection
public void setDataCollection(DataCollection value)
value
- allowed object is
DataCollection
public List<BibliographicReference> getBibliographicReference()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the bibliographicReference property.
For example, to add a new item, do as follows:
getBibliographicReference().add(newItem);
Objects of the following type(s) are allowed in the list
BibliographicReference
public Calendar getCreationDate()
String
public void setCreationDate(Calendar value)
value
- allowed object is
String
public String getVersion()
String
public void setVersion(String value)
value
- allowed object is
String
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