Uses of Class
uk.ac.ebi.jmzidml.model.mzidml.AbstractParam

Packages that use AbstractParam
uk.ac.ebi.jmzidml.model.mzidml   
uk.ac.ebi.jmzidml.model.mzidml.params   
uk.ac.ebi.jmzidml.xml.jaxb.resolver   
 

Uses of AbstractParam in uk.ac.ebi.jmzidml.model.mzidml
 

Subclasses of AbstractParam in uk.ac.ebi.jmzidml.model.mzidml
 class CvParam
          A single entry from an ontology or a controlled vocabulary.
 class UserParam
          A single user-defined parameter.
 

Fields in uk.ac.ebi.jmzidml.model.mzidml declared as AbstractParam
protected  AbstractParam Param.paramGroup
           
 

Fields in uk.ac.ebi.jmzidml.model.mzidml with type parameters of type AbstractParam
protected  List<AbstractParam> SpectrumIdentificationResult.paramGroup
           
protected  List<AbstractParam> SpectrumIdentificationList.paramGroup
           
protected  List<AbstractParam> SpectrumIdentificationItem.paramGroup
           
protected  List<AbstractParam> SourceFile.paramGroup
           
protected  List<AbstractParam> Sample.paramGroup
           
protected  List<AbstractParam> ProteinDetectionList.paramGroup
           
protected  List<AbstractParam> ProteinDetectionHypothesis.paramGroup
           
protected  List<AbstractParam> ProteinAmbiguityGroup.paramGroup
           
protected  List<AbstractParam> PeptideEvidence.paramGroup
           
protected  List<AbstractParam> Peptide.paramGroup
           
protected  List<AbstractParam> ParamList.paramGroup
           
protected  List<AbstractParam> MassTable.paramGroup
           
protected  List<AbstractParam> DBSequence.paramGroup
           
protected  List<AbstractParam> AmbiguousResidue.paramGroup
           
protected  List<AbstractParam> AbstractContact.paramGroup
           
 

Methods in uk.ac.ebi.jmzidml.model.mzidml that return types with arguments of type AbstractParam
 List<AbstractParam> SpectrumIdentificationResult.getParamGroup()
          Scores or parameters associated with the SpectrumIdentificationResult (i.e the set of SpectrumIdentificationItems derived from one spectrum) e.g.
 List<AbstractParam> SpectrumIdentificationList.getParamGroup()
          Scores or output parameters associated with the SpectrumIdentificationList.Gets the value of the paramGroup property.
 List<AbstractParam> SpectrumIdentificationItem.getParamGroup()
          Scores or attributes associated with the SpectrumIdentificationItem e.g.
 List<AbstractParam> SourceFile.getParamGroup()
          Any additional parameters description the source file.Gets the value of the paramGroup property.
 List<AbstractParam> Sample.getParamGroup()
          The characteristics of a Material.Gets the value of the paramGroup property.
 List<AbstractParam> ProteinDetectionList.getParamGroup()
          Scores or output parameters associated with the whole ProteinDetectionList Gets the value of the paramGroup property.
 List<AbstractParam> ProteinDetectionHypothesis.getParamGroup()
          Scores or parameters associated with this ProteinDetectionHypothesis e.g.
 List<AbstractParam> ProteinAmbiguityGroup.getParamGroup()
          Scores or parameters associated with the ProteinAmbiguityGroup.Gets the value of the paramGroup property.
 List<AbstractParam> PeptideEvidence.getParamGroup()
          Additional parameters or descriptors for the PeptideEvidence.Gets the value of the paramGroup property.
 List<AbstractParam> Peptide.getParamGroup()
          Additional descriptors of this peptide sequence Gets the value of the paramGroup property.
 List<AbstractParam> ParamList.getParamGroup()
          Gets the value of the paramGroup property.
 List<AbstractParam> MassTable.getParamGroup()
          Additional parameters or descriptors for the MassTable.Gets the value of the paramGroup property.
 List<AbstractParam> DBSequence.getParamGroup()
          Additional descriptors for the sequence, such as taxon, description line etc.Gets the value of the paramGroup property.
 List<AbstractParam> AmbiguousResidue.getParamGroup()
          Parameters for capturing e.g.
 List<AbstractParam> AbstractContact.getParamGroup()
          Attributes of this contact such as address, email, telephone etc.Gets the value of the paramGroup property.
 

Methods in uk.ac.ebi.jmzidml.model.mzidml with parameters of type AbstractParam
 void Param.setParam(AbstractParam value)
          Sets the value of the paramGroup property.
 

Uses of AbstractParam in uk.ac.ebi.jmzidml.model.mzidml.params
 

Subclasses of AbstractParam in uk.ac.ebi.jmzidml.model.mzidml.params
 class AdditionalParamsCvParam
          User: gokelly Date: 11/04/11 Time: 14:46
 class AdditionalParamsUserParam
          User: gokelly Date: 11/04/11 Time: 14:47
 class AdditionalSearchParamsCvParam
          User: gokelly Date: 11/04/11 Time: 15:30
 class AdditionalSearchParamsUserParam
          User: gokelly Date: 11/04/11 Time: 15:31
 class AmbiguousResidueCvParam
           
 class AmbiguousResidueUserParam
           
 class AnalysisParamsCvParam
          User: gokelly Date: 11/04/11 Time: 10:25
 class AnalysisParamsUserParam
          User: gokelly Date: 11/04/11 Time: 10:25
 class DatabaseNameCvParam
          User: gokelly Date: 4/14/11 Time: 2:06 PM
 class DatabaseNameUserParam
          User: gokelly Date: 4/14/11 Time: 2:06 PM
 class DBSequenceCvParam
           
 class DBSequenceUserParam
           
 class EnzymeNameCvParam
          User: gokelly Date: 11/04/11 Time: 14:10
 class EnzymeNameUserParam
          User: gokelly Date: 11/04/11 Time: 14:10
 class ExcludeCvParam
          User: gokelly Date: 11/04/11 Time: 16:00
 class ExcludeUserParam
          User: gokelly Date: 11/04/11 Time: 16:00
 class FileFormatCvParam
           
 class FilterTypeCvParam
          User: gokelly Date: 4/14/11 Time: 2:09 PM
 class FilterTypeUserParam
          User: gokelly Date: 4/14/11 Time: 2:09 PM
 class IncludeCvParam
          User: gokelly Date: 11/04/11 Time: 15:58
 class IncludeUserParam
          User: gokelly Date: 11/04/11 Time: 15:59
 class IonTypeCvParam
           
 class MassTableCvParam
           
 class MassTableUserParam
           
 class MeasureCvParam
           
 class ModificationCvParam
           
 class ModificationUserParam
           
 class ModParamCvParam
           
 class OrganizationCvParam
          Created by IntelliJ IDEA.
 class OrganizationUserParam
          Created by IntelliJ IDEA.
 class PeptideCvParam
           
 class PeptideEvidenceCvParam
           
 class PeptideEvidenceListCvParam
          Created by IntelliJ IDEA.
 class PeptideEvidenceListUserParam
          Created by IntelliJ IDEA.
 class PeptideEvidenceUserParam
           
 class PeptideUserParam
           
 class PersonCvParam
          Created by IntelliJ IDEA.
 class PersonUserParam
          Created by IntelliJ IDEA.
 class ProteinAmbiguityGroupCvParam
           
 class ProteinAmbiguityGroupUserParam
           
 class ProteinDetectionHypothesisCvParam
           
 class ProteinDetectionHypothesisUserParam
           
 class ProteinDetectionListCvParam
           
 class ProteinDetectionListUserParam
           
 class RoleCvParam
           
 class SampleCvParam
           
 class SampleUserParam
           
 class SearchDatabaseCvParam
           
 class SearchTypeCvParam
          User: gokelly Date: 4/14/11 Time: 2:10 PM
 class SearchTypeUserParam
          User: gokelly Date: 4/14/11 Time: 2:10 PM
 class SoftwareNameCvParam
          User: gokelly Date: 4/14/11 Time: 2:08 PM
 class SoftwareNameUserParam
          User: gokelly Date: 4/14/11 Time: 2:08 PM
 class SourceFileCvParam
           
 class SourceFileUserParam
           
 class SpecificityRulesCvParam
           
 class SpectrumIdentificationItemCvParam
           
 class SpectrumIdentificationItemUserParam
           
 class SpectrumIdentificationListCvParam
           
 class SpectrumIdentificationListUserParam
           
 class SpectrumIdentificationResultCvParam
           
 class SpectrumIdentificationResultUserParam
           
 class SpectrumIDFormatCvParam
           
 class ThresholdCvParam
          User: gokelly Date: 11/04/11 Time: 10:23
 class ThresholdUserParam
          User: gokelly Date: 11/04/11 Time: 10:24
 class ToleranceCvParam
           
 class TranslationTableCvParam
           
 

Uses of AbstractParam in uk.ac.ebi.jmzidml.xml.jaxb.resolver
 

Methods in uk.ac.ebi.jmzidml.xml.jaxb.resolver with parameters of type AbstractParam
 void AbstractParamUnitCvRefResolver.updateObject(AbstractParam object)
           
 



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