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java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.Identifiable
uk.ac.ebi.jmzidml.model.mzidml.SpectrumIdentificationList
public class SpectrumIdentificationList
Represents the set of all search results from SpectrumIdentification.
Java class for SpectrumIdentificationListType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="SpectrumIdentificationListType"> <complexContent> <extension base="{http://psidev.info/psi/pi/mzIdentML/1.1}IdentifiableType"> <sequence> <element name="FragmentationTable" type="{http://psidev.info/psi/pi/mzIdentML/1.1}FragmentationTableType" minOccurs="0"/> <element name="SpectrumIdentificationResult" type="{http://psidev.info/psi/pi/mzIdentML/1.1}SpectrumIdentificationResultType" maxOccurs="unbounded"/> <group ref="{http://psidev.info/psi/pi/mzIdentML/1.1}ParamGroup" maxOccurs="unbounded" minOccurs="0"/> </sequence> <attribute name="numSequencesSearched" type="{http://www.w3.org/2001/XMLSchema}long" /> </extension> </complexContent> </complexType>
Field Summary | |
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protected FragmentationTable |
fragmentationTable
|
protected Long |
numSequencesSearched
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protected List<AbstractParam> |
paramGroup
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protected List<SpectrumIdentificationResult> |
spectrumIdentificationResult
|
Fields inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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id, name |
Constructor Summary | |
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SpectrumIdentificationList()
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Method Summary | |
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List<CvParam> |
getCvParam()
|
FragmentationTable |
getFragmentationTable()
Gets the value of the fragmentationTable property. |
Long |
getNumSequencesSearched()
Gets the value of the numSequencesSearched property. |
List<AbstractParam> |
getParamGroup()
Scores or output parameters associated with the SpectrumIdentificationList.Gets the value of the paramGroup property. |
List<SpectrumIdentificationResult> |
getSpectrumIdentificationResult()
Gets the value of the spectrumIdentificationResult property. |
List<UserParam> |
getUserParam()
|
void |
setFragmentationTable(FragmentationTable value)
Sets the value of the fragmentationTable property. |
void |
setNumSequencesSearched(Long value)
Sets the value of the numSequencesSearched property. |
Methods inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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getId, getName, setId, setName |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
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getHid |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected FragmentationTable fragmentationTable
protected List<SpectrumIdentificationResult> spectrumIdentificationResult
protected List<AbstractParam> paramGroup
protected Long numSequencesSearched
Constructor Detail |
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public SpectrumIdentificationList()
Method Detail |
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public FragmentationTable getFragmentationTable()
FragmentationTable
public void setFragmentationTable(FragmentationTable value)
value
- allowed object is
FragmentationTable
public List<SpectrumIdentificationResult> getSpectrumIdentificationResult()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the spectrumIdentificationResult property.
For example, to add a new item, do as follows:
getSpectrumIdentificationResult().add(newItem);
Objects of the following type(s) are allowed in the list
SpectrumIdentificationResult
public List<AbstractParam> getParamGroup()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the paramGroup property.
For example, to add a new item, do as follows:
getParamGroup().add(newItem);
Objects of the following type(s) are allowed in the list
UserParam
CvParam
public Long getNumSequencesSearched()
Long
public void setNumSequencesSearched(Long value)
value
- allowed object is
Long
public List<CvParam> getCvParam()
getCvParam
in interface CvParamListCapable
getCvParam
in interface ParamGroupCapable
public List<UserParam> getUserParam()
getUserParam
in interface ParamGroupCapable
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