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java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.Identifiable
uk.ac.ebi.jmzidml.model.mzidml.ProteinAmbiguityGroup
public class ProteinAmbiguityGroup
A set of logically related results from a protein detection, for example to represent conflicting assignments of peptides to proteins.
Java class for ProteinAmbiguityGroupType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="ProteinAmbiguityGroupType"> <complexContent> <extension base="{http://psidev.info/psi/pi/mzIdentML/1.1}IdentifiableType"> <sequence> <element name="ProteinDetectionHypothesis" type="{http://psidev.info/psi/pi/mzIdentML/1.1}ProteinDetectionHypothesisType" maxOccurs="unbounded"/> <group ref="{http://psidev.info/psi/pi/mzIdentML/1.1}ParamGroup" maxOccurs="unbounded" minOccurs="0"/> </sequence> </extension> </complexContent> </complexType>
Field Summary | |
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protected List<AbstractParam> |
paramGroup
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protected List<ProteinDetectionHypothesis> |
proteinDetectionHypothesis
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Fields inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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id, name |
Constructor Summary | |
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ProteinAmbiguityGroup()
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Method Summary | |
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List<CvParam> |
getCvParam()
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List<AbstractParam> |
getParamGroup()
Scores or parameters associated with the ProteinAmbiguityGroup.Gets the value of the paramGroup property. |
List<ProteinDetectionHypothesis> |
getProteinDetectionHypothesis()
Gets the value of the proteinDetectionHypothesis property. |
List<UserParam> |
getUserParam()
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Methods inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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getId, getName, setId, setName |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
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getHid |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected List<ProteinDetectionHypothesis> proteinDetectionHypothesis
protected List<AbstractParam> paramGroup
Constructor Detail |
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public ProteinAmbiguityGroup()
Method Detail |
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public List<ProteinDetectionHypothesis> getProteinDetectionHypothesis()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the proteinDetectionHypothesis property.
For example, to add a new item, do as follows:
getProteinDetectionHypothesis().add(newItem);
Objects of the following type(s) are allowed in the list
ProteinDetectionHypothesis
public List<AbstractParam> getParamGroup()
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a set
method for the paramGroup property.
For example, to add a new item, do as follows:
getParamGroup().add(newItem);
Objects of the following type(s) are allowed in the list
UserParam
CvParam
public List<CvParam> getCvParam()
getCvParam
in interface CvParamListCapable
getCvParam
in interface ParamGroupCapable
public List<UserParam> getUserParam()
getUserParam
in interface ParamGroupCapable
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