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java.lang.Objectuk.ac.ebi.jmzidml.model.MzIdentMLObject
uk.ac.ebi.jmzidml.model.mzidml.Identifiable
uk.ac.ebi.jmzidml.model.mzidml.Enzyme
public class Enzyme
The details of an individual cleavage enzyme should be provided by giving a regular expression or a CV term if a "standard" enzyme cleavage has been performed.
Java class for EnzymeType complex type.
The following schema fragment specifies the expected content contained within this class.
<complexType name="EnzymeType"> <complexContent> <extension base="{http://psidev.info/psi/pi/mzIdentML/1.1}IdentifiableType"> <sequence> <element name="SiteRegexp" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/> <element name="EnzymeName" type="{http://psidev.info/psi/pi/mzIdentML/1.1}ParamListType" minOccurs="0"/> </sequence> <attribute name="nTermGain"> <simpleType> <restriction base="{http://www.w3.org/2001/XMLSchema}string"> <pattern value="[A-Za-z0-9 ]+"/> </restriction> </simpleType> </attribute> <attribute name="cTermGain"> <simpleType> <restriction base="{http://www.w3.org/2001/XMLSchema}string"> <pattern value="[A-Za-z0-9 ]+"/> </restriction> </simpleType> </attribute> <attribute name="semiSpecific" type="{http://www.w3.org/2001/XMLSchema}boolean" /> <attribute name="missedCleavages" type="{http://www.w3.org/2001/XMLSchema}int" /> <attribute name="minDistance"> <simpleType> <restriction base="{http://www.w3.org/2001/XMLSchema}int"> <minInclusive value="1"/> </restriction> </simpleType> </attribute> </extension> </complexContent> </complexType>
Field Summary | |
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protected String |
cTermGain
|
protected ParamList |
enzymeName
|
protected Integer |
minDistance
|
protected Integer |
missedCleavages
|
protected String |
nTermGain
|
protected Boolean |
semiSpecific
|
protected String |
siteRegexp
|
Fields inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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id, name |
Constructor Summary | |
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Enzyme()
|
Method Summary | |
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String |
getCTermGain()
Gets the value of the cTermGain property. |
ParamList |
getEnzymeName()
Gets the value of the enzymeName property. |
Integer |
getMinDistance()
Gets the value of the minDistance property. |
Integer |
getMissedCleavages()
Gets the value of the missedCleavages property. |
String |
getNTermGain()
Gets the value of the nTermGain property. |
String |
getSiteRegexp()
Gets the value of the siteRegexp property. |
Boolean |
isSemiSpecific()
Gets the value of the semiSpecific property. |
void |
setCTermGain(String value)
Sets the value of the cTermGain property. |
void |
setEnzymeName(ParamList value)
Sets the value of the enzymeName property. |
void |
setMinDistance(Integer value)
Sets the value of the minDistance property. |
void |
setMissedCleavages(Integer value)
Sets the value of the missedCleavages property. |
void |
setNTermGain(String value)
Sets the value of the nTermGain property. |
void |
setSemiSpecific(Boolean value)
Sets the value of the semiSpecific property. |
void |
setSiteRegexp(String value)
Sets the value of the siteRegexp property. |
Methods inherited from class uk.ac.ebi.jmzidml.model.mzidml.Identifiable |
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getId, getName, setId, setName |
Methods inherited from class uk.ac.ebi.jmzidml.model.MzIdentMLObject |
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getHid |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected String siteRegexp
protected ParamList enzymeName
protected String nTermGain
protected String cTermGain
protected Boolean semiSpecific
protected Integer missedCleavages
protected Integer minDistance
Constructor Detail |
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public Enzyme()
Method Detail |
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public String getSiteRegexp()
String
public void setSiteRegexp(String value)
value
- allowed object is
String
public ParamList getEnzymeName()
ParamList
public void setEnzymeName(ParamList value)
value
- allowed object is
ParamList
public String getNTermGain()
String
public void setNTermGain(String value)
value
- allowed object is
String
public String getCTermGain()
String
public void setCTermGain(String value)
value
- allowed object is
String
public Boolean isSemiSpecific()
Boolean
public void setSemiSpecific(Boolean value)
value
- allowed object is
Boolean
public Integer getMissedCleavages()
Integer
public void setMissedCleavages(Integer value)
value
- allowed object is
Integer
public Integer getMinDistance()
Integer
public void setMinDistance(Integer value)
value
- allowed object is
Integer
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