FastqPuri
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io_trimFilterDS.h File Reference

buffer fq output, write summary file More...

#include <stdio.h>
#include "defines.h"
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Classes

struct  _stats_TFDS
 collects stats info from the filtering procedure More...
 

Typedefs

typedef struct _stats_TFDS Stats_TFDS
 collects stats info from the filtering procedure
 

Functions

void buffer_outputDS (FILE *fout, const char *a, const int len, const int fd_i)
 buffers the output before writing to disk More...
 
void write_summary_TFDS (Stats_TFDS tfds_stats, char *filename)
 writes stats of filtering to summary file (binary)
 

Detailed Description

buffer fq output, write summary file

Author
Paula Perez paula.nosp@m.pere.nosp@m.zrubi.nosp@m.o@gm.nosp@m.ail.c.nosp@m.om
Date
06.10.2017

Function Documentation

◆ buffer_outputDS()

void buffer_outputDS ( FILE *  fout,
const char *  str,
const int  len,
const int  fd_i 
)

buffers the output before writing to disk

Parameters
foutFILE pointer where we might write to disk;
strstring we want to add
lenlength of the string we want to add
fd_iidentifier: GOOD1, ADAP1, CONT1, LOWQ1, NNNN1, GOOD2, ADAP2, CONT2, LOWQ2, NNNN2