FastqPuri
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_iparam_makeBloom Struct Reference

contains makeBloom input parameters More...

#include <init_makeBloom.h>

Public Attributes

char * inputfasta
 
char filterfile [MAX_FILENAME]
 
char paramfile [MAX_FILENAME]
 
int kmersize
 
int hashNum
 
double falsePosRate
 
uint64_t bfsizeBits
 
uint64_t nelem
 

Detailed Description

contains makeBloom input parameters

Note
nelemen will be computed once the fasta file is read and loaded.

Member Data Documentation

◆ bfsizeBits

uint64_t _iparam_makeBloom::bfsizeBits

bloom filter size (bits)

◆ falsePosRate

double _iparam_makeBloom::falsePosRate

false positive rate

◆ filterfile

char _iparam_makeBloom::filterfile[MAX_FILENAME]

filter file path

◆ hashNum

int _iparam_makeBloom::hashNum

number of hash functions used to construct the filter

◆ inputfasta

char* _iparam_makeBloom::inputfasta

fasta input file

◆ kmersize

int _iparam_makeBloom::kmersize

kmer size (number of elements)

◆ nelem

uint64_t _iparam_makeBloom::nelem

number of elements that the bloomfilter will contain

◆ paramfile

char _iparam_makeBloom::paramfile[MAX_FILENAME]

param file path


The documentation for this struct was generated from the following file: