FastqPuri
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stores info needed to create the summary graphs More...
#include <stats_info.h>
Public Attributes | |
int | read_len |
int | ntiles |
int | nQ |
int | minQ |
int | tile_pos |
int | nreads |
int | reads_wN |
int | sz_lowQ_ACGT_tile |
int | sz_ACGT_tile |
int | sz_reads_MlowQ |
int | sz_QPosTile_table |
int | sz_ACGT_pos |
int * | tile_tags |
int * | lane_tags |
int * | qual_tags |
uint64_t * | lowQ_ACGT_tile |
uint64_t * | ACGT_tile |
uint64_t * | reads_MlowQ |
uint64_t * | QPosTile_table |
uint64_t * | ACGT_pos |
stores info needed to create the summary graphs
uint64_t* statsinfo::ACGT_pos |
# A, C, G, T, N per position
uint64_t* statsinfo::ACGT_tile |
# A, C, G, T, N per tile, to compute the fraction of lowQuality bases per tile and per nucleotide.
int* statsinfo::lane_tags |
Names of the existing tiles
uint64_t* statsinfo::lowQ_ACGT_tile |
# low Quality A, C, G, T, N per tile
int statsinfo::minQ |
Minimum quality threshold
int statsinfo::nQ |
# possible quality values
int statsinfo::nreads |
# reads read till current position.
int statsinfo::ntiles |
# tiles
uint64_t* statsinfo::QPosTile_table |
# bases of a given quality per tile.
int* statsinfo::qual_tags |
Names of the existing qualities
int statsinfo::read_len |
Maximum length of a read
uint64_t* statsinfo::reads_MlowQ |
# reads with M(position) lowQuality bases.
int statsinfo::reads_wN |
# reads with N's found till current position
int statsinfo::sz_ACGT_pos |
ACGT_pos size = read_len * N_ACGT
int statsinfo::sz_ACGT_tile |
ACGT_tile size = ntiles * NACGT
int statsinfo::sz_lowQ_ACGT_tile |
lowQ_ACGT_tile size = ntiles * N_ACGT
int statsinfo::sz_QPosTile_table |
QposTile_Table size = ntiles * nQ * read_len
int statsinfo::sz_reads_MlowQ |
reads_MlowQ size = read_len + 1
int statsinfo::tile_pos |
current tile position
int* statsinfo::tile_tags |
Names of the existing tiles