FastqPuri
Public Attributes | List of all members
_fq_read Struct Reference

stores a fastq entry More...

#include <fq_read.h>

Public Attributes

char line1 [READ_MAXLEN]
 
char line2 [READ_MAXLEN]
 
char line3 [READ_MAXLEN]
 
char line4 [READ_MAXLEN]
 
int L
 
int start
 
int Lhalf
 
char extended [READ_MAXLEN]
 
unsigned char pack [(READ_MAXLEN+1)/2]
 
unsigned char packsh [(READ_MAXLEN+1)/2]
 
int L_ad
 
int L_ext
 
int L_pack
 
int L_packsh
 

Detailed Description

stores a fastq entry

Member Data Documentation

◆ extended

char _fq_read::extended[READ_MAXLEN]

extended sequence, adapter added to 5' end

◆ L

int _fq_read::L

read length

◆ L_ad

int _fq_read::L_ad

length of adapter sequence

◆ L_ext

int _fq_read::L_ext

length of extended sequence

◆ L_pack

int _fq_read::L_pack

length of packed sequence

◆ L_packsh

int _fq_read::L_packsh

length of packed sequence (shifted)

◆ Lhalf

int _fq_read::Lhalf

half of read length

◆ line1

char _fq_read::line1[READ_MAXLEN]

Line 1 in fastq entry

◆ line2

char _fq_read::line2[READ_MAXLEN]

Line 2 in fastq entry

◆ line3

char _fq_read::line3[READ_MAXLEN]

Line 3 in fastq entry

◆ line4

char _fq_read::line4[READ_MAXLEN]

Line 4 in fastq entry

◆ pack

unsigned char _fq_read::pack[(READ_MAXLEN+1)/2]

pack sequence

◆ packsh

unsigned char _fq_read::packsh[(READ_MAXLEN+1)/2]

pack sequence with shift

◆ start

int _fq_read::start

nucleotide position start. Can only be different from zero if the read has been filtered with this tool.


The documentation for this struct was generated from the following file: