FastqPuri
|
stores a fastq entry More...
#include <fq_read.h>
Public Attributes | |
char | line1 [READ_MAXLEN] |
char | line2 [READ_MAXLEN] |
char | line3 [READ_MAXLEN] |
char | line4 [READ_MAXLEN] |
int | L |
int | start |
int | Lhalf |
char | extended [READ_MAXLEN] |
unsigned char | pack [(READ_MAXLEN+1)/2] |
unsigned char | packsh [(READ_MAXLEN+1)/2] |
int | L_ad |
int | L_ext |
int | L_pack |
int | L_packsh |
stores a fastq entry
char _fq_read::extended[READ_MAXLEN] |
extended sequence, adapter added to 5' end
int _fq_read::L |
read length
int _fq_read::L_ad |
length of adapter sequence
int _fq_read::L_ext |
length of extended sequence
int _fq_read::L_pack |
length of packed sequence
int _fq_read::L_packsh |
length of packed sequence (shifted)
int _fq_read::Lhalf |
half of read length
char _fq_read::line1[READ_MAXLEN] |
Line 1 in fastq entry
char _fq_read::line2[READ_MAXLEN] |
Line 2 in fastq entry
char _fq_read::line3[READ_MAXLEN] |
Line 3 in fastq entry
char _fq_read::line4[READ_MAXLEN] |
Line 4 in fastq entry
unsigned char _fq_read::pack[(READ_MAXLEN+1)/2] |
pack sequence
unsigned char _fq_read::packsh[(READ_MAXLEN+1)/2] |
pack sequence with shift
int _fq_read::start |
nucleotide position start. Can only be different from zero if the read has been filtered with this tool.