30 #ifndef STRUCT_TRIMFILTER_H_ 31 #define STRUCT_TRIMFILTER_H_ 80 #endif // endif _STRUCT_TRIMFILTER_H_ int globright
Definition: struct_trimFilter.h:74
Adapter ad
Definition: struct_trimFilter.h:59
void free_parTF(Iparam_trimFilter *ptr_parTF)
frees the allocated memory in Iparam_trimFilter
Definition: struct_trimFilter.c:36
trimFilter input parameters
Definition: struct_trimFilter.h:51
char * Oprefix
Definition: struct_trimFilter.h:57
int minQ
Definition: struct_trimFilter.h:68
int method
Definition: struct_trimFilter.h:63
functions that implement the bloom filter
int mismatches
Definition: struct_trimFilter.h:42
char * Iidx
Definition: struct_trimFilter.h:55
char * Ifa
Definition: struct_trimFilter.h:54
char * ad2_fa
Definition: struct_trimFilter.h:41
double threshold
Definition: struct_trimFilter.h:43
char * Ifq2
Definition: struct_trimFilter.h:53
double score
Definition: struct_trimFilter.h:67
int trimQ
Definition: struct_trimFilter.h:61
bool is_adapter
Definition: struct_trimFilter.h:66
int globleft
Definition: struct_trimFilter.h:73
struct _iparam_trimFilter Iparam_trimFilter
trimFilter input parameters
int trimN
Definition: struct_trimFilter.h:62
Definition: struct_trimFilter.h:39
int nlowQ
Definition: struct_trimFilter.h:71
int kmersize
Definition: struct_trimFilter.h:72
char * Ifq
Definition: struct_trimFilter.h:52
int L
Definition: struct_trimFilter.h:69
stores a processed kmer (2 bits pro nucleotide)
Definition: bloom.h:57
bool is_idx
Definition: struct_trimFilter.h:65
int minL
Definition: struct_trimFilter.h:70
char * Iinfo
Definition: struct_trimFilter.h:56
bool is_fa
Definition: struct_trimFilter.h:64
Bfkmer * ptr_bfkmer
Definition: struct_trimFilter.h:60
bool uncompress
Definition: struct_trimFilter.h:58
int Nad
Definition: struct_trimFilter.h:44
char * ad_fa
Definition: struct_trimFilter.h:40
int percent
Definition: struct_trimFilter.h:75