My Project
makeTree user manual

Reads a fasta file, creates a tree structure of a predefined depth DEPTH and saves it to a file.

NOTE: computing a tree from a fasta file is very memory intensive. The program will not compute a tree if the length of the sequences in the fasta file exceeds 10 MB.

Running the program

Usage C executable (in folder bin):

Usage: ./makeTree -f|--fasta <FASTA_INPUT> -l|--depth <DEPTH>
-o, --output <OUTPUT_FILE> Reads a *fa file, constructs a tree of
depth DEPTH and saves it compressed in OUTPUT_FILE.
Options:
-v, --version Prints package version.
-h, --help Prints help dialog.
-f, --fasta Input folder containing *bin data (output from Qreport). Mandatory option.
-l, --depth depth of the tree structure
-o, --output Output file. If the extension is not *gz, it is added. Mandatory option.

Output description

Compressed file containing the tree structure. For further details, read the Doxygen documentation of the file tree.c, function save_tree.

Example

TODOTODOTODOTODOTODO (It was tested somewhere!!)

Contributors

Paula Pérez Rubio

License

GPL v3 (see LICENSE.txt)