FastqPuri
- a -
ACGT_pos :
statsinfo
ACGT_tile :
statsinfo
ad :
_iparam_trimFilter
ad1 :
_ds_adap
ad2 :
_ds_adap
ad2_fa :
_adapter
ad_fa :
_adapter
- b -
bfsizeBits :
_bfilter
,
_iparam_makeBloom
bfsizeBytes :
_bfilter
- c -
children :
_node
compact :
_bfkmer
- d -
discarded :
_stats_TF
,
_stats_TFDS
- e -
entry :
_fa_data
entrylen :
_fa_data
extended :
_fq_read
- f -
falsePosRate :
_bfilter
,
_iparam_makeBloom
filter :
_bfilter
,
_iparam_Qreport
filterfile :
_iparam_makeBloom
filters :
_stats_TF
,
_stats_TFDS
- g -
globleft :
_iparam_trimFilter
globright :
_iparam_trimFilter
good :
_stats_TF
,
_stats_TFDS
- h -
halfsizeBytes :
_bfkmer
hangingBases :
_bfkmer
hashNum :
_bfilter
,
_bfkmer
,
_iparam_makeBloom
hashValues :
_bfkmer
hasOverhead :
_bfkmer
- i -
Ifa :
_iparam_trimFilter
Ifq :
_iparam_trimFilter
Ifq2 :
_iparam_trimFilter
Iidx :
_iparam_trimFilter
Iinfo :
_iparam_trimFilter
inputfasta :
_iparam_makeBloom
,
_iparam_makeTree
inputfile :
_iparam_Qreport
inputfolder :
_iparam_Sreport
is_adapter :
_iparam_trimFilter
is_fa :
_iparam_trimFilter
is_idx :
_iparam_trimFilter
- k -
kmersize :
_bfilter
,
_bfkmer
,
_iparam_makeBloom
,
_iparam_trimFilter
kmersizeBytes :
_bfilter
,
_bfkmer
- l -
L :
_ad_seq
,
_fq_read
,
_iparam_makeTree
,
_iparam_trimFilter
,
_tree
L1 :
_ds_adap
L2 :
_ds_adap
L_ad :
_fq_read
L_ext :
_fq_read
L_pack :
_fq_read
L_packsh :
_fq_read
lane_tags :
statsinfo
Lhalf :
_fq_read
line1 :
_fq_read
line2 :
_fq_read
line3 :
_fq_read
line4 :
_fq_read
linelen :
_fa_data
lowQ_ACGT_tile :
statsinfo
Lpack :
_ad_seq
Lpack_sh :
_ad_seq
- m -
method :
_iparam_trimFilter
minL :
_iparam_trimFilter
minQ :
_iparam_Qreport
,
_iparam_trimFilter
,
statsinfo
mismatches :
_adapter
- n -
N :
_fa_entry
,
_split
Nad :
_adapter
nelem :
_bfilter
,
_iparam_makeBloom
nentries :
_fa_data
nlines :
_fa_data
nlowQ :
_iparam_trimFilter
nnodes :
_tree
nQ :
_iparam_Qreport
,
statsinfo
nreads :
_stats_TF
,
_stats_TFDS
,
statsinfo
ntiles :
_iparam_Qreport
,
statsinfo
- o -
one_read_len :
_iparam_Qreport
Oprefix :
_iparam_trimFilter
outputfile :
_iparam_makeTree
,
_iparam_Sreport
outputfilebin :
_iparam_Qreport
outputfilehtml :
_iparam_Qreport
outputfileinfo :
_iparam_Qreport
- p -
pack :
_ad_seq
,
_fq_read
pack_sh :
_ad_seq
packsh :
_fq_read
paramfile :
_iparam_makeBloom
percent :
_iparam_trimFilter
pool_2D :
_tree
pool_available :
_tree
pool_count :
_tree
ptr_bfkmer :
_iparam_trimFilter
- q -
QPosTile_table :
statsinfo
qual_tags :
statsinfo
- r -
read_len :
_iparam_Qreport
,
statsinfo
reads_MlowQ :
statsinfo
reads_wN :
statsinfo
Rmd_file :
_iparam_Sreport
- s -
s :
_split
score :
_iparam_trimFilter
seq :
_ad_seq
,
_fa_entry
start :
_fq_read
sz_ACGT_pos :
statsinfo
sz_ACGT_tile :
statsinfo
sz_lowQ_ACGT_tile :
statsinfo
sz_QPosTile_table :
statsinfo
sz_reads_MlowQ :
statsinfo
- t -
threshold :
_adapter
tile_pos :
statsinfo
tile_tags :
statsinfo
trimmed :
_stats_TF
trimmed1 :
_stats_TFDS
trimmed2 :
_stats_TFDS
trimN :
_iparam_trimFilter
trimQ :
_iparam_trimFilter
- u -
uncompress :
_iparam_trimFilter
Generated on Mon Mar 19 2018 23:42:01 for FastqPuri by
1.8.14