FastqPuri
|
Manipulation of Lmers and sequences. More...
Functions | |
void | init_map () |
Initialize lookup table fw_1B. More... | |
void | Lmer_sLmer (char *Lmer, int L) |
Transforms an Lmer to the convention stored in the lookup table fw_1B. | |
void | rev_comp (char *sLmer, int L) |
Obtains the reverse complement, for {'\000','\001','\002','\003'}. | |
Variables | |
uint8_t | fw_1B [256] |
uint8_t | bw_1B [256] |
uint8_t | Nencode |
Manipulation of Lmers and sequences.
void init_map | ( | ) |
Initialize lookup table fw_1B.
{'a','c','g','t'} –> {'\000','\001','\002','\003'}, rest '\004'.
uint8_t bw_1B[256] |
global variable. Lookup table.
uint8_t fw_1B[256] |
global variable. Lookup table.
uint8_t Nencode |
global variable. Encoding for N's(\004)