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parse(File)
- Method in class edu.ucsd.sbrg.escher.utilities.
EscherParser
parse(InputStream, String)
- Method in class edu.ucsd.sbrg.escher.utilities.
EscherParser
parseEscherJson(File)
- Static method in class edu.ucsd.sbrg.escher.
EscherConverter
Parses given JSON file into an
EscherMap
instance using Jackson.
Point
- Class in
edu.ucsd.sbrg.escher.model
Point()
- Constructor for class edu.ucsd.sbrg.escher.model.
Point
Point(Double, Double)
- Constructor for class edu.ucsd.sbrg.escher.model.
Point
Point(Point)
- Constructor for class edu.ucsd.sbrg.escher.model.
Point
port2GlyphMap
- Variable in class edu.ucsd.sbrg.escher.converters.
SBGN2Escher
Port
ids with their respective
Glyph
ids.
Position
- Interface in
edu.ucsd.sbrg.escher.model
preprocessDataStructure(EscherMap)
- Method in class edu.ucsd.sbrg.escher.converters.
Escher2Standard
preProcessSbgn()
- Method in class edu.ucsd.sbrg.escher.converters.
SBGN2Escher
Processes the input
Sbgn
document and populates internal helper fields.
PRIMARY_NODE_HEIGHT
- Static variable in interface edu.ucsd.sbrg.escher.utilities.
EscherOptions
The primary node should be bigger than the secondary node.
PRIMARY_NODE_WIDTH
- Static variable in interface edu.ucsd.sbrg.escher.utilities.
EscherOptions
Escher maps distinguish between primary and secondary nodes.
process(List<OpenedFile<EscherMap>>)
- Method in class edu.ucsd.sbrg.escher.gui.
EscherParserWorker
processIds
- Variable in class edu.ucsd.sbrg.escher.converters.
SBGN2Escher
List of process (
Glyph
) ids.
processMap()
- Method in class edu.ucsd.sbrg.escher.model.
EscherMap
Post-processes
EscherMap
and populates internal helper fields.
propertyChange(PropertyChangeEvent)
- Method in class edu.ucsd.sbrg.escher.gui.
EscherConverterUI
putUserObject(String, T)
- Method in class edu.ucsd.sbrg.escher.model.
AbstractEscherBase
putUserObject(String, T)
- Method in interface edu.ucsd.sbrg.escher.model.
EscherBase
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