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AbstractBox - Class in edu.ucsd.sbrg.escher.model
 
AbstractBox() - Constructor for class edu.ucsd.sbrg.escher.model.AbstractBox
 
AbstractBox(AbstractBox) - Constructor for class edu.ucsd.sbrg.escher.model.AbstractBox
 
AbstractEscherBase - Class in edu.ucsd.sbrg.escher.model
 
AbstractEscherBase() - Constructor for class edu.ucsd.sbrg.escher.model.AbstractEscherBase
 
AbstractEscherBase(AbstractEscherBase) - Constructor for class edu.ucsd.sbrg.escher.model.AbstractEscherBase
 
AbstractPosition - Class in edu.ucsd.sbrg.escher.model
 
AbstractPosition() - Constructor for class edu.ucsd.sbrg.escher.model.AbstractPosition
 
AbstractPosition(AbstractPosition) - Constructor for class edu.ucsd.sbrg.escher.model.AbstractPosition
 
AbstractPosition(Double, Double) - Constructor for class edu.ucsd.sbrg.escher.model.AbstractPosition
 
add(Point) - Method in class edu.ucsd.sbrg.escher.model.Point
 
addCanvasInfo(Bbox) - Method in class edu.ucsd.sbrg.escher.converters.SBGN2Escher
Add canvas info to the internal SBGN2Escher.escherMap field.
addCanvasInfo(Layout) - Method in class edu.ucsd.sbrg.escher.converters.SBML2Escher
Create a Canvas instance from an SBML Layout.
addCompartment(EscherCompartment) - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
addConnectedSegment(String, Segment) - Method in class edu.ucsd.sbrg.escher.model.Node
 
addConnectedSegment(String, String) - Method in class edu.ucsd.sbrg.escher.model.Node
 
addCopyrightToSplashScreen() - Method in class edu.ucsd.sbrg.escher.EscherConverter
 
addGene(Gene) - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
addMetabolite(Metabolite) - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
addMetaInfo() - Method in class edu.ucsd.sbrg.escher.converters.SBGN2Escher
Add meta info about the map to the internal SBGN2Escher.escherMap field.
addNode(Node) - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
addReaction(EscherReaction) - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
addSegment(Segment) - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
addTextLabel(TextLabel) - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
addVersionNumberToSplashScreen() - Method in class edu.ucsd.sbrg.escher.EscherConverter
 
arc2GlyphMap - Variable in class edu.ucsd.sbrg.escher.converters.SBGN2Escher
Arcs' ids with their respective process (Glyph) nodes ids.
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