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I

INFER_COMPARTMENT_BOUNDS - Static variable in interface edu.ucsd.sbrg.escher.utilities.EscherOptions
This converter can infer where the boundaries of compartments could be drawn.
initGUI(AppConf) - Method in class edu.ucsd.sbrg.escher.EscherConverter
 
INPUT - Static variable in interface edu.ucsd.sbrg.escher.utilities.EscherIOOptions
Specifies the JSON input file.
INTERMERIM_RESULTS - Static variable in class edu.ucsd.sbrg.escher.gui.EscherParserWorker
 
intersect(Set<Node>) - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
isMetabolite() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isMidmarker() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isMultimarker() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isPrimary() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetBasePoint1() - Method in class edu.ucsd.sbrg.escher.model.Segment
 
isSetBasePoint2() - Method in class edu.ucsd.sbrg.escher.model.Segment
 
isSetBiggId() - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
isSetBiggId() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetCanvas() - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
isSetCoefficient() - Method in class edu.ucsd.sbrg.escher.model.Metabolite
 
isSetCompartment() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetConnectedSegments() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetDescription() - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
isSetFromNodeId() - Method in class edu.ucsd.sbrg.escher.model.Segment
 
isSetGeneReactionRule() - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
isSetHeight() - Method in class edu.ucsd.sbrg.escher.model.AbstractBox
 
isSetHeight() - Method in interface edu.ucsd.sbrg.escher.model.Box
 
isSetId() - Method in interface edu.ucsd.sbrg.escher.model.Element
 
isSetId() - Method in class edu.ucsd.sbrg.escher.model.EscherCompartment
 
isSetId() - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
isSetId() - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
isSetId() - Method in class edu.ucsd.sbrg.escher.model.Gene
 
isSetId() - Method in class edu.ucsd.sbrg.escher.model.Metabolite
 
isSetId() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetId() - Method in class edu.ucsd.sbrg.escher.model.Segment
 
isSetId() - Method in class edu.ucsd.sbrg.escher.model.TextLabel
 
isSetIsPrimary() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetLabelX() - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
isSetLabelX() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetLabelY() - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
isSetLabelY() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetMidmarker() - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
isSetName() - Method in class edu.ucsd.sbrg.escher.model.EscherCompartment
 
isSetName() - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
isSetName() - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
isSetName() - Method in class edu.ucsd.sbrg.escher.model.Gene
 
isSetName() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetNodeRefId() - Method in class edu.ucsd.sbrg.escher.model.Metabolite
 
isSetPrimary() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetReversibility() - Method in class edu.ucsd.sbrg.escher.model.EscherReaction
 
isSetSchema() - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
isSetText() - Method in class edu.ucsd.sbrg.escher.model.TextLabel
 
isSetToNodeId() - Method in class edu.ucsd.sbrg.escher.model.Segment
 
isSetType() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetURL() - Method in class edu.ucsd.sbrg.escher.model.EscherMap
 
isSetWidth() - Method in class edu.ucsd.sbrg.escher.model.AbstractBox
 
isSetWidth() - Method in interface edu.ucsd.sbrg.escher.model.Box
 
isSetX() - Method in class edu.ucsd.sbrg.escher.model.AbstractPosition
 
isSetX() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetX() - Method in interface edu.ucsd.sbrg.escher.model.Position
 
isSetY() - Method in class edu.ucsd.sbrg.escher.model.AbstractPosition
 
isSetY() - Method in class edu.ucsd.sbrg.escher.model.Node
 
isSetY() - Method in interface edu.ucsd.sbrg.escher.model.Position
 
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