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I
INFER_COMPARTMENT_BOUNDS
- Static variable in interface edu.ucsd.sbrg.escher.utilities.
EscherOptions
This converter can infer where the boundaries of compartments could be drawn.
initGUI(AppConf)
- Method in class edu.ucsd.sbrg.escher.
EscherConverter
INPUT
- Static variable in interface edu.ucsd.sbrg.escher.utilities.
EscherIOOptions
Specifies the JSON input file.
INTERMERIM_RESULTS
- Static variable in class edu.ucsd.sbrg.escher.gui.
EscherParserWorker
intersect(Set<Node>)
- Method in class edu.ucsd.sbrg.escher.model.
EscherReaction
isMetabolite()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isMidmarker()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isMultimarker()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isPrimary()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetBasePoint1()
- Method in class edu.ucsd.sbrg.escher.model.
Segment
isSetBasePoint2()
- Method in class edu.ucsd.sbrg.escher.model.
Segment
isSetBiggId()
- Method in class edu.ucsd.sbrg.escher.model.
EscherReaction
isSetBiggId()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetCanvas()
- Method in class edu.ucsd.sbrg.escher.model.
EscherMap
isSetCoefficient()
- Method in class edu.ucsd.sbrg.escher.model.
Metabolite
isSetCompartment()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetConnectedSegments()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetDescription()
- Method in class edu.ucsd.sbrg.escher.model.
EscherMap
isSetFromNodeId()
- Method in class edu.ucsd.sbrg.escher.model.
Segment
isSetGeneReactionRule()
- Method in class edu.ucsd.sbrg.escher.model.
EscherReaction
isSetHeight()
- Method in class edu.ucsd.sbrg.escher.model.
AbstractBox
isSetHeight()
- Method in interface edu.ucsd.sbrg.escher.model.
Box
isSetId()
- Method in interface edu.ucsd.sbrg.escher.model.
Element
isSetId()
- Method in class edu.ucsd.sbrg.escher.model.
EscherCompartment
isSetId()
- Method in class edu.ucsd.sbrg.escher.model.
EscherMap
isSetId()
- Method in class edu.ucsd.sbrg.escher.model.
EscherReaction
isSetId()
- Method in class edu.ucsd.sbrg.escher.model.
Gene
isSetId()
- Method in class edu.ucsd.sbrg.escher.model.
Metabolite
isSetId()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetId()
- Method in class edu.ucsd.sbrg.escher.model.
Segment
isSetId()
- Method in class edu.ucsd.sbrg.escher.model.
TextLabel
isSetIsPrimary()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetLabelX()
- Method in class edu.ucsd.sbrg.escher.model.
EscherReaction
isSetLabelX()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetLabelY()
- Method in class edu.ucsd.sbrg.escher.model.
EscherReaction
isSetLabelY()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetMidmarker()
- Method in class edu.ucsd.sbrg.escher.model.
EscherReaction
isSetName()
- Method in class edu.ucsd.sbrg.escher.model.
EscherCompartment
isSetName()
- Method in class edu.ucsd.sbrg.escher.model.
EscherMap
isSetName()
- Method in class edu.ucsd.sbrg.escher.model.
EscherReaction
isSetName()
- Method in class edu.ucsd.sbrg.escher.model.
Gene
isSetName()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetNodeRefId()
- Method in class edu.ucsd.sbrg.escher.model.
Metabolite
isSetPrimary()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetReversibility()
- Method in class edu.ucsd.sbrg.escher.model.
EscherReaction
isSetSchema()
- Method in class edu.ucsd.sbrg.escher.model.
EscherMap
isSetText()
- Method in class edu.ucsd.sbrg.escher.model.
TextLabel
isSetToNodeId()
- Method in class edu.ucsd.sbrg.escher.model.
Segment
isSetType()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetURL()
- Method in class edu.ucsd.sbrg.escher.model.
EscherMap
isSetWidth()
- Method in class edu.ucsd.sbrg.escher.model.
AbstractBox
isSetWidth()
- Method in interface edu.ucsd.sbrg.escher.model.
Box
isSetX()
- Method in class edu.ucsd.sbrg.escher.model.
AbstractPosition
isSetX()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetX()
- Method in interface edu.ucsd.sbrg.escher.model.
Position
isSetY()
- Method in class edu.ucsd.sbrg.escher.model.
AbstractPosition
isSetY()
- Method in class edu.ucsd.sbrg.escher.model.
Node
isSetY()
- Method in interface edu.ucsd.sbrg.escher.model.
Position
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