Package | Description |
---|---|
edu.ucsd.sbrg.escher.converter |
Provides converters for Escher JSON to community standards (SBGN, SBML) and vice-versa.
|
edu.ucsd.sbrg.escher.model |
Represents model classes for representation of Escher's components.
|
Modifier and Type | Method and Description |
---|---|
protected Segment |
Escher2Standard.reverse(Segment segment)
Inverses the given segment in place.
|
Modifier and Type | Method and Description |
---|---|
List<Segment> |
SBGN2Escher.createSegments(org.sbgn.bindings.Arc arc)
Create a list of
Segment s from an SBGN-ML Arc . |
protected List<Segment> |
SBML2Escher.createSegments(org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph sRG,
org.sbml.jsbml.ext.layout.ReactionGlyph rG)
Creates a list of
Segment s from a SpeciesReferenceGlyph . |
Modifier and Type | Method and Description |
---|---|
protected Segment |
Escher2Standard.reverse(Segment segment)
Inverses the given segment in place.
|
Modifier and Type | Method and Description |
---|---|
Segment |
Segment.clone() |
Segment |
EscherReaction.getSegment(String id) |
Segment |
EscherReaction.removeSegment(String key) |
Modifier and Type | Method and Description |
---|---|
Map<String,Segment> |
EscherReaction.getSegments() |
Set<Map.Entry<String,Segment>> |
EscherReaction.segments() |
Modifier and Type | Method and Description |
---|---|
void |
Node.addConnectedSegment(String reactionId,
Segment segment) |
void |
EscherReaction.addSegment(Segment segment) |
Modifier and Type | Method and Description |
---|---|
void |
EscherReaction.setSegments(Map<String,Segment> segments) |
Constructor and Description |
---|
Segment(Segment segment) |
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