public class Escher2SBML extends Escher2Standard<org.sbml.jsbml.SBMLDocument>
EscherMap
as input and creates an
SBMLDocument
based on the information provided.Modifier and Type | Field and Description |
---|---|
static ResourceBundle |
bundle
Localization support.
|
compCode, ESCHER_NODE_LINK
Constructor and Description |
---|
Escher2SBML() |
Modifier and Type | Method and Description |
---|---|
org.sbml.jsbml.SBMLDocument |
convert(EscherMap map) |
String |
getDefaultCompartmentId() |
String |
getLayoutId() |
String |
getLayoutName() |
double |
getNodeDepth() |
double |
getNodeLabelHeight() |
double |
getZ() |
void |
setDefaultCompartmentId(String compartmentId) |
void |
setDefaultCompartmentName(String compartmentName) |
void |
setLayoutId(String layoutId) |
void |
setLayoutName(String layoutName) |
void |
setNodeDepth(double nodeDepth) |
void |
setNodeLabelHeight(double nodeLabelHeight) |
void |
setZ(double z) |
extractReactionId, getCanvasDefaultHeight, getCanvasDefaultWidth, getInferCompartmentBoundaries, getLabelHeight, getLabelWidth, getPrimaryNodeHeight, getPrimaryNodeWidth, getReactionNodeRatio, getSecondaryNodeRatio, preprocessDataStructure, resolveCompartmentCode, reverse, setCanvasDefaultHeight, setCanvasDefaultWidth, setInferCompartmentBoundaries, setLabelHeight, setLabelWidth, setPrimaryNodeHeight, setPrimaryNodeWidth, setReactionNodeRatio, setSecondaryNodeRatio, toString
public static final ResourceBundle bundle
public org.sbml.jsbml.SBMLDocument convert(EscherMap map)
convert
in class Escher2Standard<org.sbml.jsbml.SBMLDocument>
public String getDefaultCompartmentId()
public String getLayoutId()
public String getLayoutName()
public double getNodeDepth()
public double getNodeLabelHeight()
public double getZ()
public void setDefaultCompartmentId(String compartmentId)
compartmentId
- the compartmentId to setpublic void setDefaultCompartmentName(String compartmentName)
compartmentName
- the compartmentName to setpublic void setLayoutId(String layoutId)
layoutId
- the layoutId to setpublic void setLayoutName(String layoutName)
layoutName
- the layoutName to setpublic void setNodeDepth(double nodeDepth)
nodeDepth
- the nodeDepth to setpublic void setNodeLabelHeight(double nodeLabelHeight)
nodeLabelHeight
- the nodeLabelHeight to setpublic void setZ(double z)
z
- the z to setCopyright © 2015–2019 University of Tübingen. All rights reserved.