Package | Description |
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edu.ucsd.sbrg.escher.converter |
Provides converters for Escher JSON to community standards (SBGN, SBML) and vice-versa.
|
edu.ucsd.sbrg.escher.model |
Represents model classes for representation of Escher's components.
|
Modifier and Type | Method and Description |
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protected Metabolite |
SBML2Escher.createMetabolite(org.sbml.jsbml.SpeciesReference speciesReference)
Creates a
Metabolite from a SpeciesReference . |
Modifier and Type | Method and Description |
---|---|
Metabolite |
Metabolite.clone() |
Metabolite |
EscherReaction.getMetabolite(String biggId) |
Modifier and Type | Method and Description |
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List<Metabolite> |
EscherReaction.getMetaboliteList() |
Map<String,Metabolite> |
EscherReaction.getMetabolites()
Gives you the mapping between BiGG ids and the metabolites with that
BiGG id that participate in this reaction.
|
Modifier and Type | Method and Description |
---|---|
void |
EscherReaction.addMetabolite(Metabolite metabolite) |
Modifier and Type | Method and Description |
---|---|
void |
EscherReaction.setMetaboliteList(List<Metabolite> metaboliteList) |
Constructor and Description |
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Metabolite(Metabolite metabolite)
Copy constructor
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