phoenix::RT Class Reference
[Graph/Tree Types and Classes]

Residue Type Class This class has a nested enum for different residues types. Supported residues types are:
standard as
ALA, ARG, ASN, ASP, CYS, GLN, GLU, GLY, HIS, ILE, LEU, LYS, MET, PHE,
PRO, SER, THR, TRP, TYR, VAL
modified standard as
ASZ, ASH - neutral ASP
GLZ, GLH - neutral GLU
HID - neutral HIS, H at ND1, converted to HIS
HIE - neutral HIS, H at NE2
HIP - positive HIS
LYZ, LYN - neutral LYS
CYM - negative CYS
CYX - half cystine, CYS in disulfide bridges
TYM - negative TYR
N and C terminus
AMN - N-terminus ammonium
AMI - N-terminus amin
CXL - C-terminus carboxylate
CXC - C-terminus carbon acid
UNK - unspecified type. More...

#include <residuetype.hpp>

List of all members.

Public Types

enum  _RT
 the nested enum for residues types

Public Member Functions

 RT (_RT rt)
 constructor from enum
 RT (string s)
 constructor from string
 ~RT ()
 destructor
bool operator== (RT rt) const
 relational operator==
bool operator== (_RT rt) const
 relational operator==
bool operator!= (RT rt) const
 relational operator==
bool operator!= (_RT rt) const
 relational operator==
 operator unsigned int () const
 cast from RT to unsigned int
 operator string () const
 cast from RT to string


Detailed Description

Residue Type Class This class has a nested enum for different residues types. Supported residues types are:
standard as
ALA, ARG, ASN, ASP, CYS, GLN, GLU, GLY, HIS, ILE, LEU, LYS, MET, PHE,
PRO, SER, THR, TRP, TYR, VAL
modified standard as
ASZ, ASH - neutral ASP
GLZ, GLH - neutral GLU
HID - neutral HIS, H at ND1, converted to HIS
HIE - neutral HIS, H at NE2
HIP - positive HIS
LYZ, LYN - neutral LYS
CYM - negative CYS
CYX - half cystine, CYS in disulfide bridges
TYM - negative TYR
N and C terminus
AMN - N-terminus ammonium
AMI - N-terminus amin
CXL - C-terminus carboxylate
CXC - C-terminus carbon acid
UNK - unspecified type.
The documentation for this class was generated from the following file:

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