| Chain (phoenix) |
| Optimizer (paradocks) |
| |||
Atom (phoenix) |
| GEO (phoenix) | OptimizerError (paradocks) | Residue (phoenix) | |||
| ELE (phoenix) | Grid (paradocks) |
| RT (phoenix) | |||
Bond (phoenix) |
|
| ParadocksConfig (paradocks) |
| |||
BT (phoenix) | Fitness (paradocks) | MOL (phoenix) | PhoenixError (phoenix) | StaticNeighborhood (paradocks) | |||
| FitnessError (paradocks) |
| PSO (paradocks) | SWLS (paradocks) |