Synchronized Navigation with Neuroglancer
This widget allows to open an instance of Neuroglancer
in a new window and synchronizes its navigation with CATMAID
(x,y,z position, scale level). In order for the synchronized navigation to work properly,
the image dataset shown in Neuroglancer needs to match the specification of the dataset that
is open in the main stack viewer in CATMAID.
FAFB Example
- assuming you are using the FAFB dataset in CATMAID and have it open in a stack viewer
- you can browse the same dataset in Neuroglancer by visiting this page and clicking on the link which opens Neuroglancer with the dataset
- in CATMAID, you can open the 'Neuroglancer Widget' and then copy-paste the Neuroglancer URL into the text field in the widget
- pressing the 'Open Neuroglancer' button opens a new Neuroglancer window which keeps the center-location of the stack viewer and the zoom-level in CATMAID in sync with Neuroglancer
- now, you can quickly look at neuron segmentation and meshes in Neuroglancer based on your current location in CATMAID