Subroutine Coverage
lib/Sanger/CGP/TraFiC/Filter.pm |
|
Criterion |
Covered |
Total |
% |
subroutine |
13 |
28 |
46.4
|
pod |
5 |
13 |
38.4
|
line |
count |
pod |
subroutine |
35
|
2 |
n/a |
BEGIN |
36
|
2 |
n/a |
BEGIN |
37
|
2 |
n/a |
BEGIN |
38
|
2 |
n/a |
BEGIN |
39
|
2 |
n/a |
BEGIN |
40
|
2 |
n/a |
BEGIN |
41
|
2 |
n/a |
BEGIN |
42
|
2 |
n/a |
BEGIN |
43
|
2 |
n/a |
BEGIN |
45
|
2 |
n/a |
BEGIN |
47
|
2 |
n/a |
BEGIN |
57
|
3 |
No |
new |
71
|
0 |
No |
assume_sorted |
75
|
1 |
Yes |
set_output |
82
|
0 |
Yes |
set_clusters |
97
|
0 |
Yes |
filter |
126
|
0 |
Yes |
output |
163
|
0 |
n/a |
_filter |
213
|
0 |
n/a |
_filter_tes |
252
|
0 |
n/a |
_filter_set |
292
|
0 |
Yes |
add_filter_file |
309
|
0 |
n/a |
_load_clusters |
362
|
0 |
No |
set_min_filter_reads |
368
|
0 |
No |
set_min_germline_reads |
374
|
0 |
No |
set_divergence |
380
|
0 |
No |
set_readlength |
386
|
0 |
No |
set_germline_file |
395
|
0 |
No |
set_te_file |