line |
true |
false |
branch |
53
|
0 |
2 |
unless defined which('sort')
|
77
|
0 |
3 |
unless (exists $$neg{$family})
|
83
|
1 |
2 |
unless (exists $$neg{$family}{$chr})
|
114
|
0 |
1 |
unless system($sort_command) == 0
|
147
|
1 |
1 |
if ($$neg_hits[$neg_i]{'l_pos'} < $$pos{'r_pos'})
|
151
|
0 |
1 |
if ($$neg_hits[$neg_i]{'r_pos'} + 200 < $$pos{'l_pos'})
|
156
|
0 |
1 |
if ($$neg_hits[$neg_i]{'l_pos'} - 200 > $$pos{'r_pos'})
|
172
|
2 |
8 |
if substr($cluster, 0, 1) eq '#'
|
201
|
86288 |
96472 |
if $fam eq 'Alu' and $class ne 'INTER_CHROM' and $$self{'paired_alu'} == 1
|
203
|
10356 |
102400 |
if ($p_chr eq $chr and $p_fam eq $fam and $pos - $p_pos <= 200) { }
|
220
|
56 |
102352 |
if (scalar @{$cluster;} >= $$self{'min_reads'})
|
246
|
65 |
105 |
if (defined $reads and @{$reads;} > 0)
|
260
|
2 |
0 |
if defined $paired_alu
|
266
|
0 |
1 |
unless -e $root_path
|
267
|
0 |
1 |
unless -d $root_path
|
268
|
0 |
1 |
unless -w $root_path
|