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NAME

TraFiC_candOrph.pl - Merge orphan reads and find remaining candidates for transposon or viral detection

SYNOPSIS

TraFiC_candOrph.pl [-h] -o /some/path/ -i path_to_search/

  Required options:

    --indir   (-i)  Define a base path to search for files of type *.o.sam

  Other options:

    --output  (-o)  Output written to inputdir unless otherwise specified

    --help    (-h)  This message

  Examples:
    TraFiC_candOrph.pl -o $HOME/trafic/COLO-829 -i outdir_of_TraFiC_candReads.pl/

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