TraFiC_candOrph.pl - Merge orphan reads and find remaining candidates for transposon or viral detection
TraFiC_candOrph.pl [-h] -o /some/path/ -i path_to_search/
Required options: --indir (-i) Define a base path to search for files of type *.o.sam Other options: --output (-o) Output written to inputdir unless otherwise specified --help (-h) This message Examples: TraFiC_candOrph.pl -o $HOME/trafic/COLO-829 -i outdir_of_TraFiC_candReads.pl/