Question 0 - Me
Question 1 - Proficiency
Question 2
Question 3 - Loading Custom Data - IGV
Download the bigwig file located here
and load it into IGV. Identify the peak value in the given genomic windows to the nearest integer:
Answer below:
Question 4 - Loading Custom Data - UCSC
UCSC cannot directly accept file uploads so copy this address "http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeHaibRnaSeq/wgEncodeHaibRnaSeqJurkatRawRep2.bigWig"
and load it into the UCSC genome browser by going here and pasting it into the first box.
View the track by going here. Leave DEFAULT settings on.
Identify the peak value in the given genomic windows to the nearest integer:
Answer below:
Question 5 - Loading Custom Data - PBrowse
Download the bigwig file located here
and load it into the genome browser.
Select a track and use Shift+Uparrow/Downarrow to make it bigger/smaller
Identify the peak value in the given genomic windows to the nearest integer:
Answer below:
Question 6 - Identify gene positions - UCSC
Using the UCSC browser with DEFAULT SETTINGS, identify and record the positions of the following REFSEQ genes, no extra data files are necessary:
Answer below:
Question 7 - Identify gene positions - IGV
Using the genome browser, identify and record the positions of the following genes:
Answer below:
Question 8 - Identify gene positions - PBrowse
Using the genome browser, identify and record the positions of the following genes.
CLICK on a gene in the view to see FULL DETAILS:
Answer below: