Package | Description |
---|---|
org.sbolstandard.core2 |
Modifier and Type | Method and Description |
---|---|
static Sequence |
SBOLFactory.createSequence(String URIprefix,
String displayId,
String version,
String elements,
URI encoding)
Creates a sequence with the given arguments, and then adds it to the factory's internal
SBOL document's list of sequences.
|
Sequence |
SBOLDocument.createSequence(String URIprefix,
String displayId,
String version,
String elements,
URI encoding)
Creates a Sequence instance with the given arguments, and then adds it to this SBOLDocument
object's list of Sequence instances.
|
static Sequence |
SBOLFactory.createSequence(String displayId,
String version,
String elements,
URI encoding)
Creates a sequence with the given arguments, and then adds it to the factory's internal
SBOL document's list of sequences.
|
Sequence |
SBOLDocument.createSequence(String displayId,
String version,
String elements,
URI encoding)
Creates a Sequence instance with this SBOL document's
defaultURIprefix
and the given arguments, and then adds it to this SBOL document's list of Sequence instances. |
static Sequence |
SBOLFactory.createSequence(String displayId,
String elements,
URI encoding)
Creates a sequence with the given arguments, and then adds it to the factory's internal
SBOL document's list of sequences.
|
Sequence |
SBOLDocument.createSequence(String displayId,
String elements,
URI encoding)
Creates a Sequence instance with this SBOL document's
defaultURIprefix ,
the given arguments, and an empty version string, and then
adds it to this SBOL document's list of Sequence instances. |
static Sequence |
SBOLFactory.getSequence(String displayId,
String version)
Returns the sequence matching the given display ID and version from the factory's internal SBOL document's
list of sequences.
|
Sequence |
SBOLDocument.getSequence(String displayId,
String version)
Returns the sequence matching the given display ID
and version from this SBOL document's list of sequences.
|
static Sequence |
SBOLFactory.getSequence(URI sequenceURI)
Returns the sequence matching the given identity URI from the factory's internal SBOL document's
list of sequences.
|
Sequence |
SBOLDocument.getSequence(URI sequenceURI)
Returns the sequence matching the given
modelURI from this
SBOL document's list of sequences. |
Sequence |
ComponentDefinition.getSequenceByEncoding(URI encoding)
Returns the first sequence referenced by this component definition that matches the given sequence encoding.
|
Modifier and Type | Method and Description |
---|---|
static Set<Sequence> |
SBOLFactory.getSequences()
Returns the set of sequences owned by the factory's internal SBOL document.
|
Set<Sequence> |
SBOLDocument.getSequences()
Returns the set of sequences owned by this SBOL document.
|
Set<Sequence> |
ComponentDefinition.getSequences()
Returns the set of sequences referenced by this component definition.
|
Modifier and Type | Method and Description |
---|---|
boolean |
ComponentDefinition.addSequence(Sequence sequence)
Adds the URI of the given Sequence instance to this component definition's
set of sequence URIs.
|
static boolean |
SBOLFactory.removeSequence(Sequence sequence)
Removes the given sequence from the factory's internal SBOL document's list of sequences.
|
boolean |
SBOLDocument.removeSequence(Sequence sequence)
Removes the given sequence from this SBOL document's list of sequences.
|
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