Package | Description |
---|---|
org.sbolstandard.core2 |
Modifier and Type | Class and Description |
---|---|
class |
Collection
Represents an Collection object in the SBOL data model.
|
class |
ComponentDefinition
Represents a ComponentDefinition object in the SBOL data model.
|
class |
GenericTopLevel
Represents a GenericTopLevel object in the SBOL data model.
|
class |
Model
Represents a Model object in the SBOL data model.
|
class |
ModuleDefinition
Represents a ModuleDefinition object in the SBOL data model.
|
class |
Sequence
Represents a Sequence object in the SBOL data model.
|
Modifier and Type | Method and Description |
---|---|
static TopLevel |
SBOLFactory.createCopy(TopLevel topLevel)
Creates an identical copy of the given top-level, and then adds the created top-level to the
corresponding list of top-levels in the factory's internal SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel)
Creates an identical copy of the given top-level, and then adds the created top-level to the corresponding
list of top-levels in this SBOL document.
|
static TopLevel |
SBOLFactory.createCopy(TopLevel topLevel,
String displayId)
Creates an identical copy of the given top-level, and then adds the created top-level to the
corresponding list of top-levels in the factory's internal SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String displayId)
Creates a copy of the given top-level with the given display ID, and then adds the created top-level to the corresponding
list of top-levels in this SBOL document.
|
static TopLevel |
SBOLFactory.createCopy(TopLevel topLevel,
String displayId,
String version)
Creates an identical copy of the given top-level, and then adds the created top-level to the
corresponding list of top-levels in the factory's internal SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String displayId,
String version)
Creates a copy of the given top-level with the given display ID and version,
and then adds the created top-level to the corresponding list of top-levels in this SBOL document.
|
static TopLevel |
SBOLFactory.createCopy(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Creates an identical copy of the given top-level, and then adds the created top-level to the
corresponding list of top-levels in the factory's internal SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Creates a copy of the given top-level with the given URI prefix, display ID and version,
and then adds the created top-level to the corresponding list of top-levels in this SBOL document.
|
static TopLevel |
SBOLFactory.getTopLevel(URI topLevelURI)
Returns the top-level matching the given identity URI from the factory's internal SBOL document's
list of top-levels.
|
TopLevel |
SBOLDocument.getTopLevel(URI topLevelURI)
Returns the top-level matching the given identity URI from this
SBOL document's lists of top-levels.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String displayId)
Renames the given top-level's display ID with the given one.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String displayId,
String version)
Renames the given top-level's display ID and version with the given ones.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Renames the given top-level's URI prefix, display ID, and version with the given ones.
|
Modifier and Type | Method and Description |
---|---|
static Set<TopLevel> |
SBOLFactory.getByWasDerivedFrom(URI wasDerivedFrom)
Retrieves a set of top-levels in the factory's internal SBOL document whose wasDerivedFrom field matches the given one.
|
Set<TopLevel> |
SBOLDocument.getByWasDerivedFrom(URI wasDerivedFrom)
Retrieves a set of top-levels in this SBOL document whose
wasDerivedFrom field matches
the given one. |
Set<TopLevel> |
Collection.getMembers()
Returns the set instances referenced by this Collection instance's members.
|
static Set<TopLevel> |
SBOLFactory.getTopLevels()
Returns the set of top-levels owned by the factory's internal SBOL document.
|
Set<TopLevel> |
SBOLDocument.getTopLevels()
Returns the set of all top-levels owned by this SBOL document.
|
Modifier and Type | Method and Description |
---|---|
static TopLevel |
SBOLFactory.createCopy(TopLevel topLevel)
Creates an identical copy of the given top-level, and then adds the created top-level to the
corresponding list of top-levels in the factory's internal SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel)
Creates an identical copy of the given top-level, and then adds the created top-level to the corresponding
list of top-levels in this SBOL document.
|
static TopLevel |
SBOLFactory.createCopy(TopLevel topLevel,
String displayId)
Creates an identical copy of the given top-level, and then adds the created top-level to the
corresponding list of top-levels in the factory's internal SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String displayId)
Creates a copy of the given top-level with the given display ID, and then adds the created top-level to the corresponding
list of top-levels in this SBOL document.
|
static TopLevel |
SBOLFactory.createCopy(TopLevel topLevel,
String displayId,
String version)
Creates an identical copy of the given top-level, and then adds the created top-level to the
corresponding list of top-levels in the factory's internal SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String displayId,
String version)
Creates a copy of the given top-level with the given display ID and version,
and then adds the created top-level to the corresponding list of top-levels in this SBOL document.
|
static TopLevel |
SBOLFactory.createCopy(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Creates an identical copy of the given top-level, and then adds the created top-level to the
corresponding list of top-levels in the factory's internal SBOL document.
|
TopLevel |
SBOLDocument.createCopy(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Creates a copy of the given top-level with the given URI prefix, display ID and version,
and then adds the created top-level to the corresponding list of top-levels in this SBOL document.
|
static SBOLDocument |
SBOLFactory.createRecursiveCopy(TopLevel topLevel)
Creates an identical copy of the given top-level and returns it in
a new SBOL document.
|
SBOLDocument |
SBOLDocument.createRecursiveCopy(TopLevel topLevel)
Creates an identical copy of the given top-level and returns it in
a new SBOLDocument.
|
void |
SBOLDocument.removeTopLevel(TopLevel topLevel)
Method to remove a TopLevel object
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String displayId)
Renames the given top-level's display ID with the given one.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String displayId,
String version)
Renames the given top-level's display ID and version with the given ones.
|
TopLevel |
SBOLDocument.rename(TopLevel topLevel,
String URIprefix,
String displayId,
String version)
Renames the given top-level's URI prefix, display ID, and version with the given ones.
|
Copyright © 2017. All rights reserved.