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Although PRIDE Inspector is design to handle large data sets with small memory footprint, it can still run out of memory if many files or public experiments are opened at the same time. If you have seen such a warning message in a pop-up window, you should try to increase the memory allocation for the program.This can be done by editing the config.props file, this file is located in the config folder of the installation directory.

In the file, change the pride.inspector.max.memory=1024 to a higher number, for instance, pride.inspector.max.memory=2048 will give PRIDE Inspector 2G of memory. Please note that you will need to restart PRIDE Inspector in order for the change to take effect. It is also important to know that on a 32-bit operating system you can not increase this value beyond 2000.