Installation¶
GrandPrix has been implemented in the GPflow package which uses TensorFlow. Thus GrandPrix installation reqruires installation of TensorFlow and GPflow first.
- Install TensorFlow
pip install tensorflow
- Install GPflow
git clone https://github.com/GPflow/GPflow.git
cd GPflow
python setup.py install
cd
- Install GrandPrix package
git clone https://github.com/ManchesterBioinference/GrandPrix
cd GrandPrix
python setup.py install
cd
Installing with a new environment¶
If you have problems with installation use the following script for a detailed setup guide from a new python environment.
- Create a new environment
conda create -n newEnv python=3.5
- Activate the new environment
source activate newEnv
- Create a new directory
mkdir newInstall
cd newInstall
- Follow the regular installation process described above
Trouble shooting¶
If you do not have sudo rights and get a Permission denied
error, use the follwing scripts to install TensorFlow, GPflow and GrandPrix:
pip install --user tensorflow
python setup.py --user install