Installation

GrandPrix has been implemented in the GPflow package which uses TensorFlow. Thus GrandPrix installation reqruires installation of TensorFlow and GPflow first.

pip install tensorflow
git clone https://github.com/GPflow/GPflow.git
cd GPflow
python setup.py install
cd
  • Install GrandPrix package
git clone https://github.com/ManchesterBioinference/GrandPrix
cd GrandPrix
python setup.py install
cd

Installing with a new environment

If you have problems with installation use the following script for a detailed setup guide from a new python environment.

  • Create a new environment
conda create -n newEnv python=3.5
  • Activate the new environment
source activate newEnv
  • Create a new directory
mkdir newInstall
cd newInstall
  • Follow the regular installation process described above

Trouble shooting

If you do not have sudo rights and get a Permission denied error, use the follwing scripts to install TensorFlow, GPflow and GrandPrix:

pip install --user tensorflow
python setup.py --user install