Intensity plot

Description

Parameters

Data files
Selects the raw data files from where the peaks were detected
X axis value
X axis display the raw data file name or the parameter defined in the "set sample parameters" window
X axis value
The user can choose from peak's height, area or retention time value to display in this axis.
Peaks
The user can select the peaks to use in this plot.

Functionality

This plot is using the third part library JfreeChart for its basic functionality. To zoom in, drag the mouse from left to right, selecting the area to zoom. To zoom out drag the zoom from right to left.

A tool bar on the right side of the window has a button to switch off/on the display of lines to connect the points.

Optionally an error bar can be displayed indicating the standard deviation of the peak value in many samples. In order to display this bar, the raw data files need to be grouped. This functionality is done by setting sample parameters defined by the user.