com.grocottlab.atlas_toolkit
Class StackRegister

java.lang.Object
  extended by com.grocottlab.atlas_toolkit.StackRegister

public class StackRegister
extends Object

This class performs group-wise registration of a multiple 3D (XYZ) image stacks in a single 2D (e.g XY, YZ, ZX) plane. It is called by LabelRegistration3D for each orthogonal plane in each iteration. It provides updates the user with progress feedback via a ProgressWindow object.


Constructor Summary
StackRegister(ImagePlus source)
           
StackRegister(ImagePlus[] source)
           
StackRegister(ImagePlus[] source, ProgressWindow progressWindow)
           
 
Method Summary
 OrthogonalTransform[] getOrthogonalTransforms()
           
 ImagePlus getTransformedImage(OrthogonalTransform ot)
           
 ImagePlus[] getTransformedImages()
           
 ImagePlus[] getTransformedImages(OrthogonalTransform[] ot)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

StackRegister

public StackRegister(ImagePlus[] source)

StackRegister

public StackRegister(ImagePlus[] source,
                     ProgressWindow progressWindow)

StackRegister

public StackRegister(ImagePlus source)
Method Detail

getTransformedImage

public ImagePlus getTransformedImage(OrthogonalTransform ot)

getTransformedImages

public ImagePlus[] getTransformedImages(OrthogonalTransform[] ot)

getTransformedImages

public ImagePlus[] getTransformedImages()

getOrthogonalTransforms

public OrthogonalTransform[] getOrthogonalTransforms()


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