Package com.grocottlab.atlas_toolkit

Class Summary
ApplyLabelRegistration_ A class for applying an Orthogonal Transform Sequence to an image stack.
ExtractNuclearSignal_ A class for extracting a normalized nuclear fluorescence signal.
LabelRegistration3D_ A class for registering multiple 3D image stacks in group-wise fashion.
MergeRegisteredVolumes_ A class for combining image stacks following registration by ApplyLabelRegistration.
OrthogonalTransform A class for holding 2D (XY) transformation coefficients as generated by bUnwarpJ.
OrthogonalTransformSequence A class for storing a sequence of orthogonal 2D transformation coefficients generated by bUnwarpJ.
ProgressWindow Provides the user with progress information about the registration process.
ProjectToLabel_ A class for projecting the extracted nuclear signal onto the surface morphology of a tissue.
SampleVolumes_ This class is used to format registered datasets ready for hierarchical clustering by the software Cluster 3.0.
StackRegister This class performs group-wise registration of a multiple 3D (XYZ) image stacks in a single 2D (e.g XY, YZ, ZX) plane.
Tree2Volume_ A class for 3D reconstruction of hierarchical clustering results generated by the Cluster 3.0 software.
 

Enum Summary
OrthogonalTransformSequence.OrthogonalPlane  
 



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