Class Summary |
ApplyLabelRegistration_ |
A class for applying an Orthogonal Transform Sequence to an image stack. |
ExtractNuclearSignal_ |
A class for extracting a normalized nuclear fluorescence signal. |
LabelRegistration3D_ |
A class for registering multiple 3D image stacks in group-wise fashion. |
MergeRegisteredVolumes_ |
A class for combining image stacks following registration by ApplyLabelRegistration. |
OrthogonalTransform |
A class for holding 2D (XY) transformation coefficients as generated by bUnwarpJ. |
OrthogonalTransformSequence |
A class for storing a sequence of orthogonal 2D transformation coefficients generated by bUnwarpJ. |
ProgressWindow |
Provides the user with progress information about the registration process. |
ProjectToLabel_ |
A class for projecting the extracted nuclear signal onto the surface morphology of a tissue. |
SampleVolumes_ |
This class is used to format registered datasets ready for hierarchical clustering by the software Cluster 3.0. |
StackRegister |
This class performs group-wise registration of a multiple 3D (XYZ) image stacks in a single 2D (e.g XY, YZ, ZX) plane. |
Tree2Volume_ |
A class for 3D reconstruction of hierarchical clustering results generated by the Cluster 3.0 software. |