motifmatchr
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Function reference

version 0.99.7

matchMotifs

Main function to match motifs

matchMotifs

  • matchMotifs
  • matchMotifs,PWMatrixList,DNAStringSet-method
  • matchMotifs,PWMatrixList,character-method
  • matchMotifs,PWMatrixList,DNAString-method
  • matchMotifs,PWMatrixList,GenomicRanges-method
  • matchMotifs,PWMatrixList,RangedSummarizedExperiment-method
  • matchMotifs,PWMatrixList,BSgenomeViews-method
  • matchMotifs,PFMatrixList,ANY-method
  • matchMotifs,PWMatrix,ANY-method
  • matchMotifs,PFMatrix,ANY-method

Accessors

Accessor functions for results

motifCounts

  • motifCounts
  • motifCounts,SummarizedExperiment-method

motifMatches

  • motifMatches
  • motifMatches,SummarizedExperiment-method

motifScores

  • motifScores
  • motifScores,SummarizedExperiment-method

Data

Some sample motifs

example_motifs

  • example_motifs

Contents

  • matchMotifs
  • Accessors
  • Data

Developed by Alicia Schep.

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