The model contains one compartment called "compartment". There are four species named S1, S2, S3 and S4 and two parameters named k1 and k2. Species S4 is labeled as an SBML boundary species. The model contains one reaction defined as:
Reaction | Rate |
S1 → S2 | k1 · S1 · compartment |
The model contains two rules:
Type | Variable | Formula |
Rate | S3 | k1 · 0.5 10−3 |
Rate | S4 | −k2 · 0.5 10−3 |
The initial conditions are as follows:
Value | Units | |
Initial amount of S1 | 1.5 × 10−3 | mole |
Initial amount of S2 | 2.0 × 10−3 | mole |
Initial amount of S3 | 1.5 × 10−3 | mole |
Initial amount of S4 | 4 × 10−3 | mole |
Value of parameter k1 | 0.693 | second-1 |
Value of parameter k2 | 0.25 | second-1 |
Volume of compartment "compartment" | 1 | litre |
The species values are given as amounts of substance to make it easier to use the model in a discrete stochastic simulator, but (as per usual SBML principles) their symbols represent their values in concentration units where they appear in expressions.
Note: The test data for this model was generated from an analytical solution of the system of equations.