ASaiM (Auvergne Sequence analysis of intestinal Microbiota) is an environment to analyze microbiota, with a focus on intestinal microbiota.
This environment is composed of:
- A framework to analyze microbiota data
- A database which takes an inventory of gut microbiota data from public data repositories
- A Web interface to query the database
Read more about ASaiM...
The ASaiM framework is a Galaxy instance to generate workflows for analyzes of microbiota data. Follow the Tutorial to learn how to use ASaiM framework to analyze microbiota data
This framework relies on numerous tools for data pretreatments, taxonomic analyses and functional analyses, and chosen databases (COG, ...) dedicated to process microbiota data. Several standard workflows are also proposed. For more information about the tools, databases, workflows and ASaiM framework in general, please read the ASaiM documentation.
Galaxy is an open, web-based platform for data intensive biomedical research. The Galaxy team is a part of BX at Penn State, and the Biology department at Johns Hopkins University. The Galaxy Project is supported in part by NHGRI, NSF, The Huck Institutes of the Life Sciences, The Institute for CyberScience at Penn State, and Johns Hopkins.